PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0051s0117.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 1025aa MW: 110006 Da PI: 6.6868

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0051s0117.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	379.8	3.4e-116	648	1023	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 v+ Ll++Aea + g++e a+a+Larl+++ sp++ +p++R+a yf +AL +++++ + k lp ++ ++ ++ ++++a+ f ev Sphfalx0051s0117.1.p 648 VTYLLKAAEAAEVGNTEVAKAILARLNQHISPARgKPFHRVAYYFQQALLTHMMGAENFSEKLLPDRNLPPLEEYHKINAYVHFCEV 734 678************************887766****************666666666999999999********** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAee 171 sP++kf+h+taNqaI+ea+ege+ vH+iDf ++ G+QW+++lq +as + + +p++R+T+vg+ +++e+++tg +L+ fA++ Sphfalx0051s0117.1.p 735 SPVPKFAHFTANQAIMEAMEGENSVHVIDFRLGAGAQWASFLQDIASMQaagKLTPRVRLTAVGP----NSDEMNATGANLSAFAQS 817 ******************************************888655559******....99************ PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 l++++ef+++v++r + lel++L+++ +Ea+aVn+v++lhrlld++ s ++vLk+v++ +Pkv++vveqea+hn+++F erf Sphfalx0051s0117.1.p 818 LNISLEFQAVVTSRQQLLELSMLNLRDQEAIAVNFVFSLHRLLDDTFSNGL--SAVLKTVRDAKPKVITVVEQEANHNGSNFQERFY 902 ***************************************88887776..9***************************** PP GRAS 259 ealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 ea++yy lfdsl ++l + s ++++E ll++ei n+va+ega+r+erhe+le+Wr r+ +aGF++ pls+ qa+ ll+ Sphfalx0051s0117.1.p 903 EAFQYYLFLFDSLTSSLEPGSdssLVNASIESYLLAPEILNIVAAEGASRVERHERLEQWRIRMCTAGFQSRPLSDASHFQADKLLS 989 *********9999888855567899*****************************************************9 PP GRAS 343 kvk.sdg.yrveeesgslvlgWkdrpLvsvSaWr 374 + + +g ++v ++g+l+lgW++rpL+++S+W+ Sphfalx0051s0117.1.p 990 ERSpRRGgFQVARDNGCLLLGWQGRPLLAASSWT 1023 99986655***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	7	1	23	No hit	No description
PROSITE profile	PS50985	53.778	621	1001	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-113	648	1023	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
MARDLKRTYG GVSGSGNNMG GSCAAASVLP SMHYLARNGE MGGLAAKGSP SDHDITAATH 60 GLLQQLPFPS SSNNVKVERS SSPAAAVYES TGLYHPSFHT GRAGAQAQQA ATEAAAHEAQ 120 SGCGLTENSA LINNGSNSSQ NGGSGSETVD KGGGGGVNPQ RSAEDWWDSW AAPPAPTSAA 180 AAAAAVAEFG TFKAAGGGGY GNFDELDSIM LMLPAPAPDQ TLMRYLMGES QQSHQQGLQA 240 ALQQGGGGVL RMKDMDAVMI EQDSWSSNHE QQQQQSAQSE ISHPHGSGGG DASFSGISPS 300 SAPSCVVGVI PTSAEPTSAF LTPSFPPSLP RALSLPSHMR NITLNSGGEQ HHHHHRPNSE 360 VSVAGVSINM RSMNGPSGGY PFPAAPTSSS SMAAAASYSD SPDSSSSVPG DFFRQTLFSN 420 SSGFQALQTP QENNSFVALQ ASMGMKEVPP PPHPIRGGQT SPSSNQAFRL NHHHHHPPPS 480 LGQGSSCFYQ DSRDIATTTT PPHRNLQRSF TSLPSLSSMD QQMKQLQGMG VNRDYLLQRQ 540 KSWQPGRRSP SRHFISDHQH HHHHHQPHAP NQNTPGDWKL DMSRMQTVRT TSLSPAPPVQ 600 GGFTFSSPKL ESSFKGEEKK EGLVNPPDTG QQQQQEGGVI PEGGLDMVTY LLKAAEAAEV 660 GNTEVAKAIL ARLNQHISPA RGKPFHRVAY YFQQALLTHM MGAENFSEKL LPDRNLPPLE 720 EYHKINAYVH FCEVSPVPKF AHFTANQAIM EAMEGENSVH VIDFRLGAGA QWASFLQDIA 780 SMQAAGKLTP RVRLTAVGPN SDEMNATGAN LSAFAQSLNI SLEFQAVVTS RQQLLELSML 840 NLRDQEAIAV NFVFSLHRLL DDTFSNGLSA VLKTVRDAKP KVITVVEQEA NHNGSNFQER 900 FYEAFQYYLF LFDSLTSSLE PGSDSSLVNA SIESYLLAPE ILNIVAAEGA SRVERHERLE 960 QWRIRMCTAG FQSRPLSDAS HFQADKLLSE RSPRRGGFQV ARDNGCLLLG WQGRPLLAAS 1020 SWTC*

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

MARDLKRTYG GVSGSGNNMG GSCAAASVLP SMHYLARNGE MGGLAAKGSP SDHDITAATH  60
GLLQQLPFPS SSNNVKVERS SSPAAAVYES TGLYHPSFHT GRAGAQAQQA ATEAAAHEAQ  120
SGCGLTENSA LINNGSNSSQ NGGSGSETVD KGGGGGVNPQ RSAEDWWDSW AAPPAPTSAA  180
AAAAAVAEFG TFKAAGGGGY GNFDELDSIM LMLPAPAPDQ TLMRYLMGES QQSHQQGLQA  240
ALQQGGGGVL RMKDMDAVMI EQDSWSSNHE QQQQQSAQSE ISHPHGSGGG DASFSGISPS  300
SAPSCVVGVI PTSAEPTSAF LTPSFPPSLP RALSLPSHMR NITLNSGGEQ HHHHHRPNSE  360
VSVAGVSINM RSMNGPSGGY PFPAAPTSSS SMAAAASYSD SPDSSSSVPG DFFRQTLFSN  420
SSGFQALQTP QENNSFVALQ ASMGMKEVPP PPHPIRGGQT SPSSNQAFRL NHHHHHPPPS  480
LGQGSSCFYQ DSRDIATTTT PPHRNLQRSF TSLPSLSSMD QQMKQLQGMG VNRDYLLQRQ  540
KSWQPGRRSP SRHFISDHQH HHHHHQPHAP NQNTPGDWKL DMSRMQTVRT TSLSPAPPVQ  600
GGFTFSSPKL ESSFKGEEKK EGLVNPPDTG QQQQQEGGVI PEGGLDMVTY LLKAAEAAEV  660
GNTEVAKAIL ARLNQHISPA RGKPFHRVAY YFQQALLTHM MGAENFSEKL LPDRNLPPLE  720
EYHKINAYVH FCEVSPVPKF AHFTANQAIM EAMEGENSVH VIDFRLGAGA QWASFLQDIA  780
SMQAAGKLTP RVRLTAVGPN SDEMNATGAN LSAFAQSLNI SLEFQAVVTS RQQLLELSML  840
NLRDQEAIAV NFVFSLHRLL DDTFSNGLSA VLKTVRDAKP KVITVVEQEA NHNGSNFQER  900
FYEAFQYYLF LFDSLTSSLE PGSDSSLVNA SIESYLLAPE ILNIVAAEGA SRVERHERLE  960
QWRIRMCTAG FQSRPLSDAS HFQADKLLSE RSPRRGGFQV ARDNGCLLLG WQGRPLLAAS  1020
SWTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-55	626	1023	2	378	Protein SCARECROW
5b3h_D	2e-55	626	1023	2	378	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	4e-73	RGA-like 2

Link Out ? help Back to Top
Phytozome	Sphfalx0051s0117.1.p