PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0052s0004.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 485aa    MW: 55253.9 Da    PI: 10.0141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0052s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.95e-08203250148
                   AP2   1 sgykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                           +++kG r+++ r+    W Ae+r p++   +kr+++g f t + Aa aa+ 
  Sphfalx0052s0004.1.p 203 PKFKGLRRRPARNHakpWMAEVRNPKT---KKRIRIGDFSTRQAAALAADV 250
                           79********9999*******999854...5**********9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.9E-5203249IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-8204266IPR016177DNA-binding domain
PROSITE profilePS5103215.119204265IPR001471AP2/ERF domain
SMARTSM003802.8E-4204271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-12204266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MVLDAEICRP VADFCIRLVN DRCWKGVLFV KNFCVLVQEF RDDSEPATDG SFYGEGVGSP  60
ALAASPLSSS GVSVVAEEPL RLRGCDPVSA YPLHRFTYNA SVRWRRGHHA GVLPNGRRLE  120
ILSSCQFGDV RFEFLVLYVL YRAFIESAAD EVLNTRLQIV VQLDIHDLTP KESRTKRIER  180
AWVIEQTLAR VAASGHQQLN IRPKFKGLRR RPARNHAKPW MAEVRNPKTK KRIRIGDFST  240
RQAAALAADV GAVYYGTGKD VLNFPHTPLF LPRTLEYSSV KEKVEAVRKE ARLLRESALF  300
YLIHQLPHEV VSLEILTSYR IQGRFKLEAL VIQLMRLVRK DKEATPITFG LPAPGDIPQL  360
LQSINRLIEN NPSQEDLDVA IGTYSYFVHC FLSCLPPTRG DDIPLTLHFI RWVERNYMRA  420
PETSSWKSFP SPRVDPLRIS HRVQICRNRK LQSCRNRIQR FCKSKYRHSP ALVNAATCPC  480
HLVF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-