PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0052s0094.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 925aa    MW: 100708 Da    PI: 7.2446
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0052s0094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14387446155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Sphfalx0052s0094.1.p 387 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 446
                           78*******************655454478446**********99*************98 PP
2AP246.68.2e-15489540155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Sphfalx0052s0094.1.p 489 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 540
                           78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-16387456IPR016177DNA-binding domain
CDDcd000186.84E-20387456No hitNo description
PfamPF008471.7E-11387446IPR001471AP2/ERF domain
PROSITE profilePS5103219.072388454IPR001471AP2/ERF domain
SMARTSM003802.3E-27388460IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-15388455IPR001471AP2/ERF domain
PRINTSPR003676.2E-6389400IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-17489550IPR016177DNA-binding domain
CDDcd000185.25E-23489550No hitNo description
PfamPF008477.9E-10489540IPR001471AP2/ERF domain
SMARTSM003804.9E-32490554IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-18490549IPR001471AP2/ERF domain
PROSITE profilePS5103219.019490548IPR001471AP2/ERF domain
PRINTSPR003676.2E-6530550IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MEALLSRSQN AVEQWQLQAQ AMRAADHASS HHGIHESSQQ PHHHLFSVDQ LSRLSTVNRG  60
GAVDQQQGGV GGAAGTAHYD HHIQAETRVD GPKLEDFLGG TSLAGQYSDS GDHQSHHHHH  120
HQQQLDGLYY NAAAHGAASF QAESQSRINV NLPYTHSAGA TIGSGSLRDL APSSSTFHLT  180
AYGSAVAAQQ QQDQSNLALS HHLHHCYDHT HEHEQQLQEN NLLAAARSRS HLNAQNLLQI  240
ALDQQQQQQQ QQSDHGSLQM PAQNSTGLKS WLHHQADAAD SKAGIVLQGV SQAARHSTSS  300
LSSATALTSW QPLSLSMSAA SSSSHAVTDH SVSKQQLMLP NSHHMAESSQ AAAIVPEPRK  360
RGVGRMGAGK DGPSPRKSID TFGQRTSVYR GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR  420
QVYLGGYDKE DKAARAYDLA ALKYWGPSTT INFPLSTYEA ELEVMKNMTR QEYVASLRRK  480
SSGFSRGASV YRGVTRHHQH GRWQARIGRV AGNKDLYLGT YSTQEEAAEA YDIAAIKFRG  540
VNAVTNFDMS KYDILKIHAE KIHAAALNEQ HGQEISFKYK PVDQKLIKER RDTPGSDALC  600
VQDENHRIVT SGLPTETPGS RLELVSTHDQ DHLVSTSVSP CGLSKNLLDW QMLYQQAAAT  660
QQKHERNSWG HAAVGQDNCS SSPRELHGAG EHGSSTCDHL GFGSDAMRPP ASQASCQYNT  720
STVPSNRMLL RNLMGLEVLP QDHGVGEMSC SAGSPAGMMN HHHGLPSSAA SFLSSSQGYQ  780
AGRSDHPNMQ SAGFEHMGTI TSDQQLQTSD QRAISNSGLT YNQGSHERSD VNVSESPKNS  840
VGESEEASSK NSTFDRVMPG NLHRNLVFSS ATTSTVKMNP SYDTNPLSTW IGISNPLTMS  900
TLPGQPADRS HMGSSPIFAH SWTE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396531.10.0uncharacterized protein LOC112292371 isoform X1
TrEMBLG5EM170.0G5EM17_PHYPA; AP2-like ethylene-responsive transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-111AINTEGUMENTA-like 5