PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0054s0041.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Nin-like

Protein Properties

Length: 783aa MW: 83158.6 Da PI: 8.53

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0054s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.5	2.8e-23	485	534	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++ dls yF+l++ dAAk+Lgv++T+LK++CR++G+kRWP Rk++sl Sphfalx0054s0041.1.p 485 HHLKMADLSTYFHLSVVDAAKKLGVSQTTLKKACRKFGLKRWPGRKVRSL 534 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	470	554	IPR003035	RWP-RK domain
Pfam	PF02042	8.7E-20	487	534	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MAGLKAGAVG PGGIEKVKFT VSVRGHQWSS ARHVQETLQE FARVIQRNAR RLDFIGDGDS 60 IQRLQLANAD GSEPEELDVD ATLEDVIICM GNKQLVAIVN SSAQSPSTEC NGRPPDTEKL 120 GPASPMALAA SLHKPKAKND TSTPPPSSYA GGLATTLAAA GLTEDYTTES PGAAGLKPLP 180 VLLKNHRSVH YNQRCDPTLR GLKITIPSSD PSLASFHDSE RCAFTSQSDC ACERQVGGQI 240 PPMASRSNNC NGGGIVLHCA KGMHGGGGSM FNPGPTPSPA ELAQFLVRGS ALPHRISSGG 300 GGSMNGPIMP LCNRSTPNVG FQSFASALMS QLPVMPNSHM QCPAGTPNIA MLAQFLASQL 360 RAFVPVTEGT HPSAASAPIS PKDSKVVAPS NEVHPTAKQP PPPQTAGHDN CPATSLPGLG 420 SPKLAAVTMK LSISESHDKD QSSSSANVNA AAAPSSDGID SEQINGCSDL IFLVNRRSKT 480 GLGTHHLKMA DLSTYFHLSV VDAAKKLGVS QTTLKKACRK FGLKRWPGRK VRSLESTIHG 540 LEHTIAVGQG AGMEELTEAY MRSEVTKLQQ EMDQLVHGTP AQHSPVVRTA DLYKRLYSRG 600 WRSKYHSPCS RFDLDINNAN NDNEISVLSH STRRVSEAIK VVSSGCKAQD GGLQTNERDS 660 NGYKQNPENP KEDLQGLTTS VAAVKDTVLN ESIEQPLARE STKDAKVETS AKKTPAMDHG 720 ALPTTVISTK TFHKTCSDRE QPHTHDDKEK SLATERSPKR PKRECRNASE AGRPGLRSGT 780 CA*

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MAGLKAGAVG PGGIEKVKFT VSVRGHQWSS ARHVQETLQE FARVIQRNAR RLDFIGDGDS  60
IQRLQLANAD GSEPEELDVD ATLEDVIICM GNKQLVAIVN SSAQSPSTEC NGRPPDTEKL  120
GPASPMALAA SLHKPKAKND TSTPPPSSYA GGLATTLAAA GLTEDYTTES PGAAGLKPLP  180
VLLKNHRSVH YNQRCDPTLR GLKITIPSSD PSLASFHDSE RCAFTSQSDC ACERQVGGQI  240
PPMASRSNNC NGGGIVLHCA KGMHGGGGSM FNPGPTPSPA ELAQFLVRGS ALPHRISSGG  300
GGSMNGPIMP LCNRSTPNVG FQSFASALMS QLPVMPNSHM QCPAGTPNIA MLAQFLASQL  360
RAFVPVTEGT HPSAASAPIS PKDSKVVAPS NEVHPTAKQP PPPQTAGHDN CPATSLPGLG  420
SPKLAAVTMK LSISESHDKD QSSSSANVNA AAAPSSDGID SEQINGCSDL IFLVNRRSKT  480
GLGTHHLKMA DLSTYFHLSV VDAAKKLGVS QTTLKKACRK FGLKRWPGRK VRSLESTIHG  540
LEHTIAVGQG AGMEELTEAY MRSEVTKLQQ EMDQLVHGTP AQHSPVVRTA DLYKRLYSRG  600
WRSKYHSPCS RFDLDINNAN NDNEISVLSH STRRVSEAIK VVSSGCKAQD GGLQTNERDS  660
NGYKQNPENP KEDLQGLTTS VAAVKDTVLN ESIEQPLARE STKDAKVETS AKKTPAMDHG  720
ALPTTVISTK TFHKTCSDRE QPHTHDDKEK SLATERSPKR PKRECRNASE AGRPGLRSGT  780
CA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396538.1	0.0	uncharacterized protein LOC112292373
TrEMBL	A9TKE2	0.0	A9TKE2_PHYPA; Predicted protein
STRING	PP1S250_38V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sphfalx0054s0041.1.p