PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0054s0042.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 480aa    MW: 51436.4 Da    PI: 7.2273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0054s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06145166325
                           S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                            ++C+f+++ G C++Gd C + H
  Sphfalx0054s0042.1.p 145 AKPCNFWLK-GNCNRGDDCIYLH 166
                           579******.*********8888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3283057IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-73055IPR000571Zinc finger, CCCH-type
SMARTSM003560.00353156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-53454IPR000571Zinc finger, CCCH-type
PfamPF146080.00413555No hitNo description
PROSITE profilePS5010315.366142169IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7142168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5143167IPR000571Zinc finger, CCCH-type
PfamPF146080.062147166No hitNo description
SMARTSM003200.0018173212IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.9E-11175259IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509788.79E-50175470IPR017986WD40-repeat-containing domain
PfamPF004000.02179212IPR001680WD40 repeat
PROSITE profilePS5008213.382180221IPR001680WD40 repeat
PROSITE profilePS5029423.071180383IPR017986WD40-repeat-containing domain
PRINTSPR003204.8E-7199213IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780199213IPR019775WD40 repeat, conserved site
SMARTSM003200.0038252290IPR001680WD40 repeat
PfamPF004000.16256289IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.6E-38260469IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.9E-6297334IPR001680WD40 repeat
PfamPF004009.5E-4301334IPR001680WD40 repeat
PROSITE profilePS5008212.514304343IPR001680WD40 repeat
PRINTSPR003204.8E-7321335IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780321335IPR019775WD40 repeat, conserved site
SMARTSM003201.3E-4337374IPR001680WD40 repeat
PfamPF004007.7E-4340373IPR001680WD40 repeat
PROSITE profilePS500829.038344383IPR001680WD40 repeat
PRINTSPR003204.8E-7361375IPR020472G-protein beta WD-40 repeat
SMARTSM00320140378428IPR001680WD40 repeat
SMARTSM003201.8431468IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MMAGMEVDDG PARVGSKRNY QRSGNTGSRS HNQQICRYWQ EGRCLKGDEC QWLHPGNAGT  60
TGRGASLGNG RRTINVIDNR SENRGGWGSV GGGSGGGGFS TGSSQGRSRN VSARWGRPRN  120
AISRPGQRDR GHSDGSTGPQ RSTKAKPCNF WLKGNCNRGD DCIYLHAHTT ALDVEMMTQL  180
IGHEKAIRAI EMPQGASQLY TGSQDESVRV WDCTTGQCAN VVQMGGDVGA LLSAPGWLFI  240
GLPNEVQTWN MQTSAQQSLS GPKGQVHALA VSEDGLLFAG TQDGTILEWK FNAINNSFEP  300
AASLSGHSGP VITLLFIGNR LYSGSMDKSI RIWDVVHGLC IQTLEGHSDV VMDLLCWEQF  360
LLSCSLDGTI RVWAANAAGQ LETTFTHPED EGQAEPCNGA LKMCGCNDGA GKPVLLVSYN  420
DNIVRLYDLP TFSERGQLFS REEVRALQVG PGGLVFSGDS RGTVKVWRWT GVQLAAGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-211804716324Tako8
6g6n_A4e-211804716324Tako8
6g6n_B4e-211804716324Tako8
6g6n_C4e-211804716324Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391880.10.0zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A2K1JM600.0A0A2K1JM60_PHYPA; Uncharacterized protein
STRINGPP1S374_36V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-137C3H family protein