PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0055s0061.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 451aa    MW: 49184.7 Da    PI: 10.0286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0055s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31379436359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YY+C+s  +Cp++k+vers ed +++++tYegeH h+
  Sphfalx0055s0061.1.p 379 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrNCPARKHVERSVEDSSMLIVTYEGEHSHS 436
                           99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.6E-15335375IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.6E-32365436IPR003657WRKY domain
PROSITE profilePS5081129.138372438IPR003657WRKY domain
SuperFamilySSF1182902.35E-26375437IPR003657WRKY domain
SMARTSM007741.1E-36377437IPR003657WRKY domain
PfamPF031061.9E-26379435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEVLEYSNLG KRDRDYEVQE AARTGIDNAR KLLHILSHQQ RSQLGDEESD AAAGVAVSKF  60
QKVVSLLSRT GHARFRRAPT NPTISGYEYV FFESANFAQE EELKRIHLAK DHQSREKETM  120
NFVPDPPAAP VAPSSSAAAV ASVAAVVPQY PRPSSVSSAD GSSGHANSSV PAFLQHAQQL  180
QQQQHLQLRQ HQLQVQQQVQ QQIQQQLLWQ QQHVAPVGFV PVLPTPTEII SFGKQHQHQQ  240
ESSRSALMQE KASRSSQVDN SMSSGPPLST TTKSGFSVVS MDGSGATDNN LQKQQQQTSS  300
ALSPAALEPR AQAGGGHHHA AAGNNNKKSS GITSDDNGGA KSSCASVGRC HRSKRRKLRM  360
KRTIKVPAIS SKLADIPPDD YSWRKYGQKP IKGSPHPRGY YKCSSMRNCP ARKHVERSVE  420
DSSMLIVTYE GEHSHSHTPS TTSTVLTVQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20370439775WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-49WRKY DNA-binding protein 74