PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0056s0091.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NF-YC

Protein Properties

Length: 225aa MW: 25612.7 Da PI: 7.6976

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0056s0091.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	144.6	2.2e-45	86	173	14	101
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 +fkn +lPlarikki+k+dedvkmi+a+aPvl++kace+fileltl sw+h+eenk rtl+++dia a+t+ difdflvdivprd+l Sphfalx0056s0091.1.p 86 REFKNYQLPLARIKKIMKSDEDVKMIAADAPVLFAKACEMFILELTLCSWIHTEENKWRTLQRNDIAGAITKGDIFDFLVDIVPRDKL 173 58***********************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.87E-27	87	164	IPR009072	Histone-fold
Pfam	PF00808	2.2E-19	92	155	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.5E-34	93	170	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MPTTASGMLH PRAVMASQYA HSQPQLHCQH VQKQQLQAFW QQQMQEIEQV NGANCCGIVS 60 IICCFWFCIS LASLVSDGLF FRFRGREFKN YQLPLARIKK IMKSDEDVKM IAADAPVLFA 120 KACEMFILEL TLCSWIHTEE NKWRTLQRND IAGAITKGDI FDFLVDIVPR DKLKVRVYTA 180 FGIFSSTISM SDFPCRYSSM GQTKDEDLAI PWSGVSGTIQ WWHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-45	87	170	12	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369382.1	1e-55	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9SMP0	4e-49	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A388LK17	1e-52	A0A388LK17_CHABU; Uncharacterized protein
STRING	PP1S315_9V6.3	4e-55	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-50	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Sphfalx0056s0091.1.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]