PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0056s0130.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

YABBY

Protein Properties

Length: 162aa MW: 17625.9 Da PI: 8.6429

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0056s0130.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	63.8	7.1e-20	61	144	87	166
YABBY 87 ekeesastsvssekl..senedeevprvppvir..PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 ++++sas+ s + ++ +++ ++ + i+ k+ r Psayn f++ee+qrika+ P +shr+af aa+k Wa P++ Sphfalx0056s0130.1.p 61 STTSSASALSSCAPMesKTTQKRTITTDDKQIKaeNSGKKTRHPSAYNIFMREEMQRIKAARPLLSHRQAFGAASKSWATCPRV 144 444445555555555323344444544444444115679******************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-20	62	144	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-6	89	142	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.3E-4	94	142	IPR009071	High mobility group box domain
CDD	cd00084	1.67E-4	102	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MLYTSQPFKF FHTLILNEVQ ESVDPLFAYG SGMQKHECNA TMVFSPSKLG GSVDTMSGTV 60 STTSSASALS SCAPMESKTT QKRTITTDDK QIKAENSGKK TRHPSAYNIF MREEMQRIKA 120 ARPLLSHRQA FGAASKSWAT CPRVSGLDLA GDQEADCTNQ F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-15	YABBY family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0056s0130.1.p