PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0058s0104.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family DBB
Protein Properties Length: 248aa    MW: 27277.8 Da    PI: 5.8571
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0058s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.68.9e-07434536
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                           C+ +e   ++lfC  ++  lC  C ++ H g
  Sphfalx0058s0104.1.p  4 LCDVCEGAAARLFCAADEAALCLRCDEKVH-G 34
                          7******99*******************99.5 PP
2zf-B_box231.6e-075392338
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                           ++C+ +e+  + +fC  +++ lC dC +  H g    H+
  Sphfalx0058s0104.1.p 53 VPRCDICENAAAFFFCGIDGTSLCLDCDMDVHIGgkktHE 92
                          589*******9******************99944555675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48147IPR000315B-box-type zinc finger
PfamPF006433.2E-5342IPR000315B-box-type zinc finger
CDDcd000211.32E-6345No hitNo description
SMARTSM003362.0E-7447IPR000315B-box-type zinc finger
SMARTSM003361.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501198.6315196IPR000315B-box-type zinc finger
PfamPF006436.3E-65392IPR000315B-box-type zinc finger
CDDcd000218.40E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKILCDVCEG AAARLFCAAD EAALCLRCDE KVHGCNKLAS RHVRLELAES RAVPRCDICE  60
NAAAFFFCGI DGTSLCLDCD MDVHIGGKKT HERYLLTGQR VELPTRKLTP EETIDVDQEA  120
GDFNKDGTQQ QQQQQIIHHH HHHHHHHHHD EVLQAERIII PNSSCEHKSS NMLAVEIVMG  180
DKEPLLLESN QPVSHMIDLN AQPKHLLTQA SLPDKRDGPE EPLSTTGVNG AGVVPNLPPT  240
ALEETGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387802.12e-81B-box zinc finger protein 18-like
RefseqXP_024387803.12e-81B-box zinc finger protein 18-like
TrEMBLA9RVR66e-80A9RVR6_PHYPA; Predicted protein
STRINGPP1S31_376V6.19e-81(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-51DBB family protein