PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0059s0101.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 769aa MW: 84034.5 Da PI: 5.4737

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0059s0101.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373	3.9e-114	394	762	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lLl+cA+av+++d++ a++ +a+l++++s +g+ qR+a+yf+eAL ar+++++ +ly al+ ++ s e l+a++lf e++P++ Sphfalx0059s0101.1.p 394 YLLLRCAQAVEQNDFSHASEQIAELRQHSSAYGNGPQRMAHYFMEALVARMSGTGGQLYTALNNNRPS---ALEMLKAFRLFAETCPFV 479 58**********************************************************999998...8************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++sh N aI++++ ++rvHi+D++i +G+QWp+L++ L++ p+gpp+lRiTg+++p++g ++++etg+rLa++Ae gvpfef Sphfalx0059s0101.1.p 480 RMSHYFSNMAIVNEIGDAKRVHIVDYGILYGVQWPCLMNYLSKLPGGPPHLRITGIDRPQAGfrPLDRIKETGRRLAQVAEDHGVPFEF 568 *********************************************************9999******************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++ +a+++e++++ +L ++++E+laVn++++l +l+des +s+r+ vLk ++s++Pk++v +a +n++ F rf ea++++sal Sphfalx0059s0101.1.p 569 HA-IAEKWEAITPAHLFLRNDEVLAVNCIFRLRHLMDESIMAASPRNLVLKRIQSMNPKIFVQGVVNAGYNAPFFTSRFREAVSHFSAL 656 .7*********************************************************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 fd+lea++p+e+ +r+ vE+e+lgrei n+vaceg er+er e +++W++r +aGF+++p+ +++ ++ + l+ +++ d y + e+ Sphfalx0059s0101.1.p 657 FDALEASMPAEHPDRVIVEQEILGREILNIVACEGLERVERAEPYKQWQARTLRAGFTQMPILDQTREKCRNLMTTYHRD-YGIGEDGS 744 **************************************************************************66.**** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 +l+ gWk+r + ++SaW+ Sphfalx0059s0101.1.p 745 WLLAGWKERIVHAFSAWQ 762 ***************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.111	366	743	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-111	394	762	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MAGSKHGRSG GSGGGEVSPL AAQLQQAWLK TQMPKTQKRS LISAPSQGKA GPEVQSPHSP 60 PVPFEEQSAF KSLSSIFPEL AALPQEKKPM IFSVFQEGEG PKSRSLSLLP DDSSNSCPSP 120 FDGMLSGAAK KKTTSSPSLQ HRSLSASPAM LQSSNSFENL AAAAAAPVLS TSRHSSLPSL 180 ADDYSPDYTT GSTPSEGEAG SPIDLQGLDT VDAAVGVEGR NIPFYHYLNS LLDEEPEHNK 240 CMFVECSAYQ AMAKELGDLI GDDSSVQSDT KSSDKEDLDR WLDEITGGPL PDEVPPDGLE 300 HSYESFTGDK GCDLFQNLTV GNGGSWANEV EMLPEAAGVQ SIGPNLDSVC PSSLDDDALH 360 HSNMANGGNG YVSKPTVSQQ ISNGHHIPPV DLNYLLLRCA QAVEQNDFSH ASEQIAELRQ 420 HSSAYGNGPQ RMAHYFMEAL VARMSGTGGQ LYTALNNNRP SALEMLKAFR LFAETCPFVR 480 MSHYFSNMAI VNEIGDAKRV HIVDYGILYG VQWPCLMNYL SKLPGGPPHL RITGIDRPQA 540 GFRPLDRIKE TGRRLAQVAE DHGVPFEFHA IAEKWEAITP AHLFLRNDEV LAVNCIFRLR 600 HLMDESIMAA SPRNLVLKRI QSMNPKIFVQ GVVNAGYNAP FFTSRFREAV SHFSALFDAL 660 EASMPAEHPD RVIVEQEILG REILNIVACE GLERVERAEP YKQWQARTLR AGFTQMPILD 720 QTREKCRNLM TTYHRDYGIG EDGSWLLAGW KERIVHAFSA WQPTPVSP*

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MAGSKHGRSG GSGGGEVSPL AAQLQQAWLK TQMPKTQKRS LISAPSQGKA GPEVQSPHSP  60
PVPFEEQSAF KSLSSIFPEL AALPQEKKPM IFSVFQEGEG PKSRSLSLLP DDSSNSCPSP  120
FDGMLSGAAK KKTTSSPSLQ HRSLSASPAM LQSSNSFENL AAAAAAPVLS TSRHSSLPSL  180
ADDYSPDYTT GSTPSEGEAG SPIDLQGLDT VDAAVGVEGR NIPFYHYLNS LLDEEPEHNK  240
CMFVECSAYQ AMAKELGDLI GDDSSVQSDT KSSDKEDLDR WLDEITGGPL PDEVPPDGLE  300
HSYESFTGDK GCDLFQNLTV GNGGSWANEV EMLPEAAGVQ SIGPNLDSVC PSSLDDDALH  360
HSNMANGGNG YVSKPTVSQQ ISNGHHIPPV DLNYLLLRCA QAVEQNDFSH ASEQIAELRQ  420
HSSAYGNGPQ RMAHYFMEAL VARMSGTGGQ LYTALNNNRP SALEMLKAFR LFAETCPFVR  480
MSHYFSNMAI VNEIGDAKRV HIVDYGILYG VQWPCLMNYL SKLPGGPPHL RITGIDRPQA  540
GFRPLDRIKE TGRRLAQVAE DHGVPFEFHA IAEKWEAITP AHLFLRNDEV LAVNCIFRLR  600
HLMDESIMAA SPRNLVLKRI QSMNPKIFVQ GVVNAGYNAP FFTSRFREAV SHFSALFDAL  660
EASMPAEHPD RVIVEQEILG REILNIVACE GLERVERAEP YKQWQARTLR AGFTQMPILD  720
QTREKCRNLM TTYHRDYGIG EDGSWLLAGW KERIVHAFSA WQPTPVSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-55	398	763	25	380	Protein SCARECROW
5b3h_A	4e-55	398	763	24	379	Protein SCARECROW
5b3h_D	4e-55	398	763	24	379	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024401598.1	0.0	scarecrow-like protein 30
Refseq	XP_024401607.1	0.0	scarecrow-like protein 30
Refseq	XP_024401617.1	0.0	scarecrow-like protein 30
TrEMBL	A0A2K1L144	0.0	A0A2K1L144_PHYPA; Uncharacterized protein
STRING	PP1S84_299V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-130	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Sphfalx0059s0101.1.p