PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0060s0049.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family DBB
Protein Properties Length: 327aa    MW: 35342.1 Da    PI: 5.9711
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0060s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.7e-07447542
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                           C+ +e+ +++  C  ++  lC dC ++ H        H++vpl
  Sphfalx0060s0049.1.p  4 QCDVCESTKATVICCADEAALCTDCDTKVHAAnklankHQRVPL 47
                          7******99*********************66889999999986 PP
2zf-B_box31.34.2e-105394338
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          +++C+ ++ek   +fC +++ llC+dC l++H+       H+
  Sphfalx0060s0049.1.p 53 APRCDICQEKSGFFFCVEDRALLCRDCDLSIHSAnsfsssHK 94
                          789*****************************6567777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.338147IPR000315B-box-type zinc finger
CDDcd000211.30E-8347No hitNo description
PfamPF006431.2E-5447IPR000315B-box-type zinc finger
SMARTSM003361.2E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.35198IPR000315B-box-type zinc finger
SMARTSM003362.1E-175198IPR000315B-box-type zinc finger
PfamPF006437.6E-85394IPR000315B-box-type zinc finger
CDDcd000214.18E-115498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKIQCDVCES TKATVICCAD EAALCTDCDT KVHAANKLAN KHQRVPLMAP TDAPRCDICQ  60
EKSGFFFCVE DRALLCRDCD LSIHSANSFS SSHKRFLIPG IRVALKALTV QEVAEAAPEE  120
RPQSSVPSSK MISTPSRMNP VMSVRSPSNV QPPLSTPSYQ PVTQSKTQGG YVSKVGEIMG  180
TSLSAGPQGS PGILRKNSIT DSLTEPASNW RVDELLNLAD LAEDWNAANM GSSKADVATF  240
GDFDWASDLS IFDEDSFHEV PKLPSPPTAS GLSRSTRMIG PIKNMKQEVA LVPDFGDAFT  300
VPDLHLDKSP PPSPPLGKRR RNYYDI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401288.11e-102B-box zinc finger protein 24-like
RefseqXP_024401289.11e-102B-box zinc finger protein 24-like
TrEMBLA0A176VIM51e-104A0A176VIM5_MARPO; Uncharacterized protein
TrEMBLA0A2R6WRC21e-104A0A2R6WRC2_MARPO; Uncharacterized protein
STRINGPP1S98_84V6.11e-101(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-47light-regulated zinc finger protein 1