PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0062s0079.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 672aa    MW: 71280.1 Da    PI: 7.4171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0062s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053276300123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           +kC+   C+k+F+++ ++k H +tH
  Sphfalx0062s0079.1.p 276 FKCThdGCNKTFKNPQTMKMHHKTH 300
                           89**********************9 PP
2zf-C2H214.88.2e-05343365223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp+C+k+F   ++L+rH  + H
  Sphfalx0062s0079.1.p 343 RCPKCKKTFVGLYELRRHYGRkH 365
                           7*****************86666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.35E-7272301No hitNo description
Gene3DG3DSA:3.30.160.608.3E-8274300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0013276300IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887276305IPR007087Zinc finger, C2H2
PROSITE patternPS000280278300IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-6342392No hitNo description
PROSITE profilePS501578.808342370IPR007087Zinc finger, C2H2
SMARTSM003550.12342365IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280344365IPR007087Zinc finger, C2H2
SMARTSM00355180372392IPR015880Zinc finger, C2H2-like
SMARTSM00355210398419IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAVVPPPMSS YSFGDSLFSH LQLGAASFPS LMSTNSLPAT LNNETCTGAP VGAALGGGGG  60
AGAGVPASSV AMAAAQYQSL SAYNKCSTST SAGAVDNAAF GSWNFAPFLL DYYTLGTNLQ  120
TVVDSMYPPV NDYLSQLLVS DDTEDFLSNG CSTSCVSMPT SSGCATPVMH PNLVSTLKTM  180
VSPASDFGGP AGSLHLFEAQ QPISLSISVD DAAHVQQQSI ARAATENPCI TQQHPHALAP  240
PTIKQEMEKS ESSGDDNMMV EAAVVSVDLI HNRRPFKCTH DGCNKTFKNP QTMKMHHKTH  300
YAELGSAARS RAAGLAAAAA SSSSTSLTAS SLKAGHNKKI PSRCPKCKKT FVGLYELRRH  360
YGRKHSEGEK GFGCRKCGKK FYIEVDVRDH EKLCGEPIEC KCGLKFAFKC NLVAHKKAHP  420
ACQDNNNNHG AAAANSASDD SASDQTSRPG NNSQLGSMAL SFKSAGSSRS TGSQGSSRSD  480
HHQHHQQQQQ HLQEDVTSPH VQSLLQSPID FAENFKQSTK PECNLSAMQF PINSASADTS  540
LWPPMQYVTD GCNSTPAAMQ QQQFQSFFNF GYGSNSNSSS SSSYPFYSIS DSGYPLQQNN  600
KMSSSKNFGS TLLEDLVNSS SSSHGMQLRT AASLPTSMGN CISSTAAYYN SSCSSFSNLQ  660
ALKDGSLQKY M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356411.11e-101zinc finger protein 850-like
TrEMBLA9TS782e-99A9TS78_PHYPA; Predicted protein
STRINGPP1S303_40V6.11e-100(Physcomitrella patens)