PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0063s0005.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 714aa    MW: 77297.8 Da    PI: 6.9976
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0063s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEde+l  +v+  G+g+W+++ ++ g+ R++k+c++rw +yl
  Sphfalx0063s0005.1.p 13 KGAWTAEEDEKLRVYVETNGTGHWRSVGKKAGLLRCGKSCRLRWTNYL 60
                          79******************************99************97 PP
2Myb_DNA-binding55.51.3e-1767109246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g++T +E++l+v++++ +G++ W++Ia++m+ gRt++++k++w++
  Sphfalx0063s0005.1.p  67 GSFTSDEEDLIVKLHATHGSR-WSLIAAKMP-GRTDNDIKNHWNT 109
                           78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.162860IPR017930Myb domain
SuperFamilySSF466896.36E-2910107IPR009057Homeodomain-like
SMARTSM007173.5E-131262IPR001005SANT/Myb domain
PfamPF002499.0E-151360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-211467IPR009057Homeodomain-like
CDDcd001672.84E-101560No hitNo description
PROSITE profilePS5129426.3561115IPR017930Myb domain
SMARTSM007179.4E-1665113IPR001005SANT/Myb domain
PfamPF002491.1E-1567109IPR001005SANT/Myb domain
CDDcd001676.18E-1268111No hitNo description
Gene3DG3DSA:1.10.10.607.8E-2568115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MTRLSKPEED IRKGAWTAEE DEKLRVYVET NGTGHWRSVG KKAGLLRCGK SCRLRWTNYL  60
RPDIRHGSFT SDEEDLIVKL HATHGSRWSL IAAKMPGRTD NDIKNHWNTR LKKKLCDMGI  120
DPVSHKPIAE LLRALAGTMQ LQSVAGRCNE VAEQAAKRCF SDSLLNKAVH DSYRRSSAGG  180
GGGHHHGTGL HGPPHHHGAA GLSPLSEVTT VNVIPQQQHQ QLAEEEYEAA AGDVFNMQQA  240
GSCVAATRGG GSGDHQHHQH HHVLSEEHSN NSGGSYSMAE SSCSEEAFSM QHGGRGGGSN  300
SDHQRQHHHQ QQHGVVQKTS LEKVLQNCSS SGHQITGATR YMSSAARNMS AGAQTCDRGG  360
LTTTDHHGDP STAPGANNLF HGTTSCTMNR DLMVPFPAAI DMQFGSSLGS NNSSNTEIEN  420
MLMLRELQQQ QHSSSQHQHH RAGGDSTRAP EFGAAAAQTR TPPEFGGAAA ESTTTTTLAP  480
NQNANAMMQQ LSTNADNYVT RWLPQQRNHS SSISHQVHEN LSQFTPSFST PSSSQLLDLR  540
DPEIQMVVQA PPPPHGMMMG EQAPGHNPES GSLAESPDIV IRTEQTSSTG PQDHQQHHPM  600
PNPNDRVALQ RIESAVNLSS SIPLNFSGLL TPNNHHHHHH NNNNNNSNCA SQFLSQGYLG  660
GPFSSLSGSF ANFSGPLSTN FSGPLTTPTG VKLQDYGSDV SSPHMMQLWD YQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25101154108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.19e-57myb domain protein 103