PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0063s0006.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YB
Protein Properties Length: 162aa    MW: 17793.8 Da    PI: 5.1702
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0063s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB49.21.3e-1513114795
                 NF-YB   7 flPianvsrimkkvlPana..k...........iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                            lP anv r++k+ l + a              + kda     e +  fi f+++ a++ c++ kr+tin+dd+l a+ +l f ++ ep
  Sphfalx0063s0006.1.p  13 GLPQANVKRVVKEKLAELAheHfdddrkekdvlVNKDALLAFSESAKIFIHFLSATANEICRESKRQTINADDVLKAVEELDFPEFCEP 101
                           589999999999998764411311111122333556666677899999***************************************** PP

                 NF-YB  83 lkvylkkyreleg 95 
                           lk+ l+ +r+ + 
  Sphfalx0063s0006.1.p 102 LKAALAGFRKEND 114
                           *********8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-3213135IPR009072Histone-fold
SuperFamilySSF471131.43E-2514124IPR009072Histone-fold
PfamPF008082.3E-104390IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAGRAHADAG SEGLPQANVK RVVKEKLAEL AHEHFDDDRK EKDVLVNKDA LLAFSESAKI  60
FIHFLSATAN EICRESKRQT INADDVLKAV EELDFPEFCE PLKAALAGFR KENDAKKQDS  120
KRKEVARKRK AGDSNGADGD IHVNGRLDEA VTMAEDEGFT D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366136.16e-54DNA polymerase epsilon subunit 3-like
RefseqXP_024366137.16e-54DNA polymerase epsilon subunit 3-like
TrEMBLA9TF101e-52A9TF10_PHYPA; Predicted protein
STRINGPP1S217_34V6.12e-53(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.18e-33nuclear factor Y, subunit B11