PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0063s0067.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 951aa    MW: 102234 Da    PI: 7.2841
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0063s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.5e-14421480155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Sphfalx0063s0067.1.p 421 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 480
                           78*******************655454478446**********99*************98 PP
2AP245.12.5e-14524574255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Sphfalx0063s0067.1.p 524 AYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDMAAIKFRG 574
                           69***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-16421490IPR016177DNA-binding domain
CDDcd000189.39E-20421490No hitNo description
PfamPF008471.8E-11421480IPR001471AP2/ERF domain
SMARTSM003802.3E-27422494IPR001471AP2/ERF domain
PROSITE profilePS5103219.072422488IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-15422489IPR001471AP2/ERF domain
PRINTSPR003675.6E-6423434IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-17523584IPR016177DNA-binding domain
CDDcd000181.57E-22523584No hitNo description
SMARTSM003801.3E-31524588IPR001471AP2/ERF domain
PROSITE profilePS5103218.979524582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17524583IPR001471AP2/ERF domain
PfamPF008477.1E-10524574IPR001471AP2/ERF domain
PRINTSPR003675.6E-6564584IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MRSSSAADDH ESLCIMEALS RSQNSVDRWQ LQARAMQAAD AASHGIHESQ AAAAHHHIFS  60
VDQFSRLASN GGAVDHQLQH QAGSAGGGQY DHMQQGPPSS SSAETRVDGP KLEDFLGGKS  120
LGGQYSDQHD HHHSHHHQQQ QQQQQLEGLY YNAAAASFQE SQTRINVNLP YTHSSSGAAA  180
GGSGSLRDMQ APASSSAFHL QAAYGSAVAA AAAQREQSGL ALNHLAQNHC YETAVHEQQQ  240
QQQLQENNLL AQSRSHLHAQ NLLQRALDQQ QQQQQSDCNS LQSRPHESSS SSGLKSWLRH  300
QADADSKLAA AAAAAAVGPQ ASVVRHSSGL SAPLVSWQPL SLSMSAGSSH VTDHTTMDHL  360
VLPGHHHVAA QTSPQAAAPV SEPRKRGTGR MGAAAASAAG GKDGSGPSPR KSIDTFGQRT  420
SVYRGVTRHR WTGRYEAHLW DNSCRKEGQT RKGRQVYLGG YDKEDKAARA YDLAALKYWG  480
PSTTINFPLS TYEAELEVMK NMTRQEYVAS LRRKSSGFSR GASAYRGVTR HHQHGRWQAR  540
IGRVAGNKDL YLGTYSTQEE AAEAYDMAAI KFRGVNAVTN FDMSRYDPQK IHAAAINGQH  600
GQEISFKCNK LPADEKLLIT ELSSTPSSDA VIRVQDENHR IMSSSLATGV PGSRLELMSI  660
DQDQLVSANL NSCGLPKNLL EWQMLYQQQA AAQQKHERNN WGHAAVEDNC CAPQEMHGAA  720
GHGSNCAHLG FGSDTMQAPA SQASNKYNTS TVPSNGMLLR NLMGLEALPQ DHGGGESSCS  780
AGSVGLMNHH HGLPSSAASL LSSSQGYQGR PDQPTMRLAA YDHLGTATSD QQLQTSDTRA  840
ISNSGLTYNQ GSHDRSDVNM ESPKNSVGES EEASSKNSTF DRVLPGDLSR NVLFSSATTS  900
TVKMNHSYNA NSMSTWIGIS NPLTMPTLAG RAANLSHMGS GPIFAHSWTE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396531.10.0uncharacterized protein LOC112292371 isoform X1
TrEMBLA0A2K1JEI20.0A0A2K1JEI2_PHYPA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-114AINTEGUMENTA-like 5