PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0064s0126.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 333aa    MW: 36681.5 Da    PI: 8.3347
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0064s0126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-18188242256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0064s0126.1.p 188 RKKLRLSKEQSALLEESFKHHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 242
                           788899***********************************************98 PP
2HD-ZIP_I/II123.11.4e-39188277191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL ke +eLr 
  Sphfalx0064s0126.1.p 188 RKKLRLSKEQSALLEESFKHHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTIENRRLLKELQELR- 275
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           ++
  Sphfalx0064s0126.1.p 276 AI 277
                           55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.25E-18175245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-18175243IPR009057Homeodomain-like
PROSITE profilePS5007117.248184244IPR001356Homeobox domain
SMARTSM003891.4E-15186248IPR001356Homeobox domain
PfamPF000462.0E-15188242IPR001356Homeobox domain
CDDcd000861.26E-15188245No hitNo description
PROSITE patternPS000270219242IPR017970Homeobox, conserved site
SMARTSM003404.0E-21244287IPR003106Leucine zipper, homeobox-associated
PfamPF021837.0E-10244277IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MLLADGRERF KEDMQTMRLM APDCGASLGL NVDIGKIVQR GHENSGPGRR LPVQLDLLPL  60
RPSHSASGTP EPSSLITKNM FSWQQQQPLR NGSWTNSGSG CDDGEVETFS SGGQGGASSP  120
RGIDMNQLPL TTEFDDAVLS SPSSIGMMKR EREKMHESFD LERERGACDL SSRGGGGSDD  180
EDGGAASRKK LRLSKEQSAL LEESFKHHST LNPKQKNALA KQLNLRPRQV EVWFQNRRAR  240
TKLKQTEVDC ELLKRCCETL TIENRRLLKE LQELRAIKAA PSRVIAHDFY TPLPAATLTM  300
CPSCERVATV DNRSITFSKP GYSHLSQAPT AC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192SRKKLRL
2236244RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.11e-134homeobox-leucine zipper protein HAT4-like
SwissprotP466021e-64HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2R6WPH01e-133A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_217V6.11e-133(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-59homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]