PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0065s0086.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 814aa    MW: 89757.4 Da    PI: 7.2503
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0065s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-19120175156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +r+ + +t+ q++e+e++F++++ p++++r++L+++lgL+ rqVk+WFq rR+++k
  Sphfalx0065s0086.1.p 120 KRSYHMHTPRQIQEMETMFKECPRPDEKQRQRLSAELGLKPRQVKFWFQSRRTQMK 175
                           6888999**********************************************998 PP
2START1281.1e-403244983159
                           HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                 START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                           a  a++el+++a++++p+W+       e++n++e++ + ++s +      ++ea r++g+v  +++ lve l+d+  qW e+++    +
  Sphfalx0065s0086.1.p 324 AVMAMEELMRMAQVGQPLWMPADsgnkEQLNYEEYTLQSPRSIGlrphgLKTEATRETGLVMSDAVSLVEALMDSC-QWMEMFPcmvsR 411
                           6679****************9888999999999999999999999*******************************.************ PP

                           EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
                 START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           a t++v+s+g      galqlm+aelq+lsp+vp R+ +f+Ry++q+ +g+w+++dvSvds +++   + ++R++++pSg+li+++s+
  Sphfalx0065s0086.1.p 412 ALTVNVLSTGvngnrhGALQLMYAELQVLSPVVPtREIYFLRYCKQHAEGVWAVADVSVDSIRDNA-PPCLMRCRRRPSGMLIQETSD 498
                           *****************************************************************9.79***************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-18109177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-19110178IPR009057Homeodomain-like
PROSITE profilePS5007116.406117177IPR001356Homeobox domain
SMARTSM003893.4E-16119181IPR001356Homeobox domain
PfamPF000461.1E-16120175IPR001356Homeobox domain
CDDcd000861.14E-15120177No hitNo description
PROSITE profilePS5084829.529313524IPR002913START domain
SuperFamilySSF559614.67E-24316523No hitNo description
CDDcd088751.95E-97317520No hitNo description
SMARTSM002343.1E-29322521IPR002913START domain
PfamPF018522.4E-32324498IPR002913START domain
SuperFamilySSF559616.87E-13544723No hitNo description
SuperFamilySSF559616.87E-13750757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MSGRVDRCPS SKRTMFVIEA GHETCASCMC IFFAPRPAAT SCVAPLTTGS LASPYGKRGW  60
SRVLGAYTSQ VKSWFQKRRT HTEEDETTLV PHENDEKLRA ENVLICDGHQ DPEHPPRQAK  120
RSYHMHTPRQ IQEMETMFKE CPRPDEKQRQ RLSAELGLKP RQVKFWFQSR RTQMKAQTER  180
ADKTLLRQEN EKLRSENILM REALKNATCQ HCGGPSTLGE MSLHEQQLRI ENGRLKEQLD  240
RVSALDAKYL SRSIPDPYVP MSTAPIAPLS LPSSSLDTQV AGSSFGSHPT PGDMDIVHNP  300
SVVDVATRPG GLSETEKPLV VDLAVMAMEE LMRMAQVGQP LWMPADSGNK EQLNYEEYTL  360
QSPRSIGLRP HGLKTEATRE TGLVMSDAVS LVEALMDSCQ WMEMFPCMVS RALTVNVLST  420
GVNGNRHGAL QLMYAELQVL SPVVPTREIY FLRYCKQHAE GVWAVADVSV DSIRDNAPPC  480
LMRCRRRPSG MLIQETSDLV NSGMAFGAQR WIATLQRQCE RLAASLLATS IPSTDLAGVP  540
TADGRRSMLK LAQRMTKNFC AAASASTAHS STTLASSGEN DDVRLMTRNG IDNLGEPHGT  600
ILSAATSLWL PVLPQRVFEF LRDESLRSEW DILSNGSLVT EMAHIAKGQD PGNSVSLLGV  660
NPLNSNVQSN LLIFQESYRD VLGSLLIYAP VDIPYMNLVL RGGDPANVVL LPSGFAILPD  720
GPENRNATTA SHDTGVAQLT SDSPRRTGHG SLLTVALQIL VATIPSARLS PERVATVNSL  780
ISTTVRRIET AMMQREKQLD EQRRSVDLGK ILE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680KRRTH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394840.10.0homeobox-leucine zipper protein HDG2-like isoform X2
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A2K1JI100.0A0A2K1JI10_PHYPA; Uncharacterized protein
STRINGPP1S209_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]