PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0066s0104.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 806aa    MW: 84842.6 Da    PI: 6.6908
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0066s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+lv+++++ G g+W+++++  g+ R++k+c++rw +yl
  Sphfalx0066s0104.1.p 14 KGLWSPEEDEKLVRYITKCGHGCWSAVPKQAGLQRCGKSCRLRWINYL 61
                          678*******************************************97 PP
2Myb_DNA-binding452.5e-1467110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg +++ E+ l+vd+++ lG++ W+ Ia  ++ gRt++++k++w++
  Sphfalx0066s0104.1.p  67 RGGFSPAEENLIVDLHAVLGNR-WSQIATQLP-GRTDNEIKNFWNS 110
                           7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.703965IPR017930Myb domain
SuperFamilySSF466891.99E-2811108IPR009057Homeodomain-like
SMARTSM007173.5E-131363IPR001005SANT/Myb domain
PfamPF002495.7E-151461IPR001005SANT/Myb domain
CDDcd001673.80E-111761No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.08566116IPR017930Myb domain
SMARTSM007174.0E-1366114IPR001005SANT/Myb domain
PfamPF002491.7E-1267110IPR001005SANT/Myb domain
CDDcd001671.43E-970109No hitNo description
PROSITE patternPS001410179190IPR001969Aspartic peptidase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006508Biological Processproteolysis
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004190Molecular Functionaspartic-type endopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MGRHSCCHKQ KLKKGLWSPE EDEKLVRYIT KCGHGCWSAV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGGF SPAEENLIVD LHAVLGNRWS QIATQLPGRT DNEIKNFWNS CIKKRLRQMG  120
IDPNTHNPVT AGAGGVTSSA SHVTSSNPAA AGNCHATASS NNMMILPGLH MSSYNNNKAL  180
VDTGSSLLTM QSSSTIGGNF NGRFQGGSNH EVLIKAAASQ SHSSRLQLMN QAQAAGNNNY  240
HHRHHHGSSM MMEPDPHHML LGPLAAAARN SQVVEMMNTA GGRKFENVEF NREGSRSAAA  300
AAAAAALNFQ GMNNTFQASN TSCSSSGLST DNLLERLMLS AKQQSSGSMQ QYLPPKVPGL  360
LQGFEAMRNC SSVKLMQSNC RELAAVAGHD DETAASAGRS SSSSVIKAES MTQCGGPTTM  420
VPNLYNPVFW LFQGSAAGNA AAAASSQADE SSVASLGTRP AGAHGLDEML PPASSKQAGG  480
ITSANAGDSA LSAAAQSGSR VCQDSTHDMK AFQRQFHGQH GPAENFYPSA VEQDHGDLSS  540
ITASITQPGN AGSGRMIPSH QLQLLLSSML EKPTSAGADE LLHHDFNAAS AGMQQNNYNE  600
MSSGQADGHG IQAAAGAHNQ QWDSSVSSST SNNNNNREGT PGTTTTTQQS GLFESNLMWA  660
NFSEKAGAAG DHPPQQNQVA AAAAATSDIM SQGEQSDQIS AAAVSPGDSD GDDTVMQWCS  720
DLTTLPGSPE DDDHHVQRSP LAPSTTASNH GPSSHAPPPA IISAWQLHQA HHGAPDLYDA  780
REGPVVATLC MSQELQRMAA VLDEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-79myb domain protein 61