PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0067s0096.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

TCP

Protein Properties

Length: 685aa MW: 71271 Da PI: 10.2438

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0067s0096.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	82.3	1.2e-25	167	293	2	97
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eL +++d++tieWLl+ a++ai+++tgt Sphfalx0067s0096.1.p 167 ATKRPPTKDRHTKVDGRGRRIRMPATCAARIFQLTRELRHKSDGETIEWLLRHAEAAIIAATGTgtvpalyssivgplrgsasmqavaa 255 899*************************************************************5555555555555555555555555 PP TCP 66 ..................ssssaseceaesssssasnsssg.........kaaksaaks 97 s + ++a+ +a++ Sphfalx0067s0096.1.p 256 agrapslqginlgftaltS---------------------RtpshqlleiSSARMQAEQ 293 5444444444444444442.....................0333333322111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.0E-29	173	298	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.916	173	227	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MESGAGHGKS YKSESQRDSG QGGGSSDTGL PPRLIQQYQQ SDSRSLVGYG SSSILRLEQE 60 QEQQQRQQQY AQAAMAAMAG HGMRGGPAAR SASQVDVTTS AMAAGGMGRG DQYGGEGQSG 120 RSNLSPGVTC GISALSRRKQ QETTMAAAAA TSAEAAKEAK KQAAAPATKR PPTKDRHTKV 180 DGRGRRIRMP ATCAARIFQL TRELRHKSDG ETIEWLLRHA EAAIIAATGT GTVPALYSSI 240 VGPLRGSASM QAVAAAGRAP SLQGINLGFT ALTSRTPSHQ LLEISSARMQ AEQMQSSRSN 300 TGWGSMSSAP EERALDISRS AGMQEGMSCI RETISGFHDH EAANMVAGRR SPSETHGLDS 360 LQDTSSRSKR PRGAAAAAAG QLSRLKEEID QSSRSMQQSS PSPRQLSSQQ VAAGPAGISS 420 ASLMQPPAAA AMWAVAAAAA ASGVPAANAT PMSSSSSAGI QPTAGTVWML PLTTSSSSSA 480 TSPGMQQVMP ETCTGGPTTV SYELQQQQQQ QQQHIWSFPP TAGQYRMLTA AQGAGSSNVS 540 STSMITLLPA PSNIQAAGAG SMGLELQGRS ISHMQQQQQQ GHQMSLAAGS TMQLLQQQQQ 600 QGIQQQLQPP TFLGLGAAAR DQAAGQSNSS GLLAALQAYS RNLQQNLDQQ RSSMLLQQSS 660 AAAGPQQQRQ AQGESTGDDP TRSR*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MESGAGHGKS YKSESQRDSG QGGGSSDTGL PPRLIQQYQQ SDSRSLVGYG SSSILRLEQE  60
QEQQQRQQQY AQAAMAAMAG HGMRGGPAAR SASQVDVTTS AMAAGGMGRG DQYGGEGQSG  120
RSNLSPGVTC GISALSRRKQ QETTMAAAAA TSAEAAKEAK KQAAAPATKR PPTKDRHTKV  180
DGRGRRIRMP ATCAARIFQL TRELRHKSDG ETIEWLLRHA EAAIIAATGT GTVPALYSSI  240
VGPLRGSASM QAVAAAGRAP SLQGINLGFT ALTSRTPSHQ LLEISSARMQ AEQMQSSRSN  300
TGWGSMSSAP EERALDISRS AGMQEGMSCI RETISGFHDH EAANMVAGRR SPSETHGLDS  360
LQDTSSRSKR PRGAAAAAAG QLSRLKEEID QSSRSMQQSS PSPRQLSSQQ VAAGPAGISS  420
ASLMQPPAAA AMWAVAAAAA ASGVPAANAT PMSSSSSAGI QPTAGTVWML PLTTSSSSSA  480
TSPGMQQVMP ETCTGGPTTV SYELQQQQQQ QQQHIWSFPP TAGQYRMLTA AQGAGSSNVS  540
STSMITLLPA PSNIQAAGAG SMGLELQGRS ISHMQQQQQQ GHQMSLAAGS TMQLLQQQQQ  600
QGIQQQLQPP TFLGLGAAAR DQAAGQSNSS GLLAALQAYS RNLQQNLDQQ RSSMLLQQSS  660
AAAGPQQQRQ AQGESTGDDP TRSR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	2e-25	TCP family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0067s0096.1.p