PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0067s0115.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 776aa    MW: 84793.3 Da    PI: 4.338
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0067s0115.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.43.9e-5561331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +ppGfrFhPtdeelv +yLk+kv+g+ +e  +vi+ vd+yk+ePwdLp k +v ++e+ew+fFs+rdkky++g+r+nrat +gyWkatg
  Sphfalx0067s0115.1.p   6 VPPGFRFHPTDEELVAYYLKRKVSGRAIED-DVIAVVDLYKCEPWDLPdKaCVGNKEREWFFFSPRDKKYPNGSRTNRATLAGYWKATG 93 
                           69*************************999.99**************96347888999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd+ v s +++++g+kktLvfy+grap+ge+tdWvmheyr+
  Sphfalx0067s0115.1.p  94 KDRFVRS-RSRNIGMKKTLVFYRGRAPNGERTDWVMHEYRI 133
                           ******9.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-604153IPR003441NAC domain
PROSITE profilePS5100559.3696153IPR003441NAC domain
PfamPF023658.8E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MARRRVPPGF RFHPTDEELV AYYLKRKVSG RAIEDDVIAV VDLYKCEPWD LPDKACVGNK  60
EREWFFFSPR DKKYPNGSRT NRATLAGYWK ATGKDRFVRS RSRNIGMKKT LVFYRGRAPN  120
GERTDWVMHE YRIEEEEVRG FQDAYVLARV FKKSGAGPKN GEQYGGEFIE EEYQSPPQEE  180
PVVDFSLEEE SEVQPGPVEA ATGALEAALP PVVKTETSMN ASALSSPAND IQESLPKALE  240
MIREYLEGEM VSSEKTFPAK PDDLQGNLLH GDDMVFQGDF GQPLGSDDEA HMLQELLEDV  300
EVGDQPGVPV EGDHREDFIN QFISGGVVGG EFALAEVGEG NGPPPLSYGA EEQVTPWEFM  360
DGDFLELKDL FLPFDEVPSW LPESNIQLQG RRSTNFPVQD SEQGTARRRS MLQMRGSSGN  420
GPVPSPISLE SYIVGSQSLP AMNMIDLPRS SSGATAHGSR PETGEHEQRS AERLSGLCST  480
SFQSEDEVAT VDRQLNLQEW EDYLITGLLP QSATSEDAPA LPKTSTEVLV TTPSEKSTDY  540
GVSAESATGV SLDFDYSGFQ SQFDLETTPQ LGDNLDEGLG IPSSDSSTYH PSKYALEKLN  600
TPACLKTLDI MGDDASEQTS KGLEGFFHLL GSFPTLPALA AECSQAGVAS PSVSSISVTA  660
TDAHLTTFTI TCSCSNQATQ HVQAAVTTGH AAATGGRLYK DIITGSWEPC KEDCQELSCV  720
TCSSSQQQLP TRQLVKGSNS GFVFVFLLGA VSALCWFLLL RGIWRVVHSV YSVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-52215311168Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-76NAC domain containing protein 28