PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0068s0052.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 632aa    MW: 69467.4 Da    PI: 5.3722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0068s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17341391255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIr     + ++ +r +lg+f+taeeAa+ ++aa+ k++g
  Sphfalx0068s0052.1.p 341 HYRGVRQRP-WGKFAAEIRN----KaRQgARMWLGTFDTAEEAAEEYDAAAFKIRG 391
                           6********.********99....44335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-28341400IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-20341400IPR016177DNA-binding domain
PfamPF008475.7E-13341391IPR001471AP2/ERF domain
CDDcd000181.83E-19341399No hitNo description
SMARTSM003805.7E-34341405IPR001471AP2/ERF domain
PROSITE profilePS5103223.235341399IPR001471AP2/ERF domain
PRINTSPR003671.5E-9342353IPR001471AP2/ERF domain
PRINTSPR003671.5E-9365381IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MASEFASRRL KIQNVMDRWA AQEKMWVLSS SSYKVQEKFG NHRVLKQQQK QFRNQLSRIP  60
DPVSGIAAFY EFAAVGSSSS SSRTGEFPAA TTTPQPEEDH GFASSFGIEN QMMAEVPPSE  120
DNSWNAAVLS GNVHHDQIMV FTPFTGTGEA AASDDGLEEE HHNAVAATLL QGNWDDGLLL  180
NDWSCVQESE CPHQEAPPVQ PMKLLEPNVQ QQPVAIQPTA SHRSPASFPE ATAMQFMKHE  240
VVVNNPFLQP AMNSSQAEIP HQEQQKLQLP QKKQGVHQKL QLKKGQQQQI KSTCCNQELQ  300
HTEQKTDHKA PVGAEAVATA AAESCPPRVK APRLSHYRGV HYRGVRQRPW GKFAAEIRNK  360
ARQGARMWLG TFDTAEEAAE EYDAAAFKIR GSRAHLNFPL RASSLAAAAA ATATSSSSPT  420
QNKTSSDLTS NGIMLSTKGS PNVVSSSILP SSNANSILLQ DPPSYKMSPR GGEGLKDQMV  480
VTASREPGSD DDHFKIPTGD HITQQRMRSR SEQKSTEADD LFPELSSFEL EDVAHKEMTT  540
MTMSPPPSCI METSEFFFGD DLEMKEKLEL QDLGAKYWEQ LLSSSNSFES DITMADIDVI  600
LAVSNPNFTS SSDGHLELFP DIFGHENSPL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28338404268ATERF1
3gcc_A1e-28338404268ATERF1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-22ethylene responsive element binding factor 1