PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0071s0018.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 739aa MW: 78197.8 Da PI: 6.9504

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0071s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.4e-07	628	669	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri +++ L+ l+P+ K++ +++LekA++Y++ L Sphfalx0071s0018.1.p 628 AARVRRERITERLKYLQNLIPNG-----DKVDMVTMLEKAINYVQCL 669 6799****************5.....5*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.42E-7	617	674	No hit	No description
PROSITE profile	PS50888	13.44	620	669	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-12	624	683	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-11	625	679	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-8	626	675	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-5	628	669	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence Send to blast
MKDAESWRGV TDEEAEASSL QQALMYNNVP DNYHASIADP SSPFLPCWND KFWLHASQRA 60 EEIHAISPPS LVVDTGTFQR QQEPSMIHFT HPSSSELLHH VVRGASDDGG LWKRPDGSSP 120 VASRMHKKLV MQDLEQYSNH NIPGSMSRVS NSLQLGYNNP LPKAAGKGIA AAAAAYGASI 180 MCDKLLLQAS SAGAGALQGS SQFVEPTGVL GIHAIDDSAQ DCGIQGLLHL QQHPPQQQIQ 240 LPVVPDIVGA IEMRGLLNTG LGFSPHGNKA AVSNVWEMQQ QNSMKSFETG LGFSPSGNEA 300 AVTNMCWEMQ QQQMNIVAGM KSFNPGPYVS SAAAVGEEQD VALAGCSRAW FENKSNTAVP 360 VGFDVTHQLG GSTTQQNVAG LQQQSGVLAS SGIKWPSRVS SIPAALPAAA LPVSPVLSGQ 420 TGLRGGMDGK TSIVMQSEED LPALKGALLP RCPPAASGNT IFIDSHKQPI SSQGDAAFHG 480 SFQNAGKKPA AGGMPWSGQG ACSRFEYLST VAHKQVSQST ASGSSRALGL ALNTDMKPLA 540 HQGSANNDLQ TIAAQNAGKK PAAAGGMSWS GGGQDSCSRF EYLSTAAHKQ VSRSTASGSS 600 SRALGPALNT NLKPRARQGS ANDPQSIAAR VRRERITERL KYLQNLIPNG DKVDMVTMLE 660 KAINYVQCLE LQIRMLKDDS LWPKALGALP NTLQELQELA GPEIAGQGQC KSDIVESEPK 720 VSTELVEKDR ANPSRSHS*

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence Send to blast

MKDAESWRGV TDEEAEASSL QQALMYNNVP DNYHASIADP SSPFLPCWND KFWLHASQRA  60
EEIHAISPPS LVVDTGTFQR QQEPSMIHFT HPSSSELLHH VVRGASDDGG LWKRPDGSSP  120
VASRMHKKLV MQDLEQYSNH NIPGSMSRVS NSLQLGYNNP LPKAAGKGIA AAAAAYGASI  180
MCDKLLLQAS SAGAGALQGS SQFVEPTGVL GIHAIDDSAQ DCGIQGLLHL QQHPPQQQIQ  240
LPVVPDIVGA IEMRGLLNTG LGFSPHGNKA AVSNVWEMQQ QNSMKSFETG LGFSPSGNEA  300
AVTNMCWEMQ QQQMNIVAGM KSFNPGPYVS SAAAVGEEQD VALAGCSRAW FENKSNTAVP  360
VGFDVTHQLG GSTTQQNVAG LQQQSGVLAS SGIKWPSRVS SIPAALPAAA LPVSPVLSGQ  420
TGLRGGMDGK TSIVMQSEED LPALKGALLP RCPPAASGNT IFIDSHKQPI SSQGDAAFHG  480
SFQNAGKKPA AGGMPWSGQG ACSRFEYLST VAHKQVSQST ASGSSRALGL ALNTDMKPLA  540
HQGSANNDLQ TIAAQNAGKK PAAAGGMSWS GGGQDSCSRF EYLSTAAHKQ VSRSTASGSS  600
SRALGPALNT NLKPRARQGS ANDPQSIAAR VRRERITERL KYLQNLIPNG DKVDMVTMLE  660
KAINYVQCLE LQIRMLKDDS LWPKALGALP NTLQELQELA GPEIAGQGQC KSDIVESEPK  720
VSTELVEKDR ANPSRSHS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	5e-26	ROOT HAIR DEFECTIVE 6-LIKE 2

Link Out ? help Back to Top
Phytozome	Sphfalx0071s0018.1.p