PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0073s0082.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NF-YB

Protein Properties

Length: 197aa MW: 21258.6 Da PI: 5.2914

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0073s0082.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	188.5	4.8e-59	32	128	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 vreqdrflPianvsrimkk+lP+nakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplkvyl+k Sphfalx0073s0082.1.p 32 VREQDRFLPIANVSRIMKKALPSNAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHK 120 69************************************************************************************* PP NF-YB 90 yrelegek 97 yrelegek Sphfalx0073s0082.1.p 121 YRELEGEK 128 ****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.5E-57	29	145	IPR009072	Histone-fold
SuperFamily	SSF47113	2.48E-42	35	144	IPR009072	Histone-fold
Pfam	PF00808	3.3E-28	38	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-21	66	84	No hit	No description
PROSITE pattern	PS00685	0	69	85	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.2E-21	85	103	No hit	No description
PRINTS	PR00615	1.2E-21	104	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MADGYGQQPG SPDSSPHSDN ESGGGHYQDA SVREQDRFLP IANVSRIMKK ALPSNAKISK 60 DAKETVQECV SEFISFITGE ASDKCQREKR KTINGDDLLW AMSTLGFEDY VEPLKVYLHK 120 YRELEGEKAS TAKQGDQSGS KEGNQGGMSS MNVGMQGGMN GGMNNMSGPI NGAIHPGSMQ 180 MMQQQYGQQQ PPPGYV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-51	31	123	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391790.1	1e-100	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024391791.1	1e-100	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024391792.1	1e-100	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024391794.1	1e-100	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024391795.1	1e-100	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	1e-70	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A0I9QPN3	4e-99	A0A0I9QPN3_PHYPA; CCAAT-box binding factor HAP3-like protein
STRING	PP1S462_7V6.1	1e-100	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-72	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Sphfalx0073s0082.1.p

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]