PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0075s0068.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 521aa    MW: 54388.3 Da    PI: 5.5259
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0075s0068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.8e-21289341156
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                           s+y+GVr+++ +g+++AeIrd s    + +r++lg+f+taeeAa a++aa++k++g+
  Sphfalx0075s0068.1.p 289 SRYRGVRQRP-WGKFAAEIRDSSR---QgARVWLGTFDTAEEAALAYDAAALKMRGP 341
                           79********.**********422...24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-16289340IPR001471AP2/ERF domain
CDDcd000184.15E-17289347No hitNo description
SuperFamilySSF541711.05E-22289348IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-31290348IPR001471AP2/ERF domain
PROSITE profilePS5103223.169290348IPR001471AP2/ERF domain
SMARTSM003804.4E-37290354IPR001471AP2/ERF domain
PRINTSPR003676.6E-11291302IPR001471AP2/ERF domain
PRINTSPR003676.6E-11314330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDFCGRSTRS RRLSSSALPG TLAAAAAVSS VVGLKEGAAA FGSNCFRDPF EALGRRVSAA  60
VVVAEKSIGL TNFSGDGFQS PAGSLRSNNG VVGSSGGVGG SLQNASDWVP GSGKLSGMKR  120
SRPDEFCAES EEPRRKSQKA WIIARKLRHS LGESFAERFR EKFGDVMKSQ ETEQQLKASM  180
QTPTSEASSQ MGGLLQNPEA GEAAAETAAK PPAEARTQYR TAKARAAFPE AMAMWLMQQH  240
RKPAAAAAPA ATQAELHRPL PPHAAEEEKP HLASSTAAAA APKDGLWRSR YRGVRQRPWG  300
KFAAEIRDSS RQGARVWLGT FDTAEEAALA YDAAALKMRG PKAHLNFLRK EEDGDHAAAA  360
DPEASSAAST AAAPTDAVDD SSAATTVAAA VSSPTSAAAA LEDFSQTAAT AAATTMVQAE  420
APTRPGAWMD STAAAAVSNN NGFVLPPNAS DFVAMETECS SNGLFVGAEE IHESAFGGCG  480
HGALEVEDLG QLFLEELLES TQHDAAAFFS SLDSQLQWPL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-24291347662ATERF1
3gcc_A2e-24291347662ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-17ERF family protein