PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0079s0027.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 991aa MW: 106366 Da PI: 6.6654

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0079s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	388.3	8.9e-119	619	989	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 ++ Ll++A+av+ g++e+aqa+Larl+++ sp++ +p++Rla+yft+AL +r+++ + + + lp + ++ ++ ++++a+ f evsP Sphfalx0079s0027.1.p 619 KTCLLSAAKAVEVGNTEMAQAILARLNQHISPTRgKPFHRLAHYFTQALVTRIMGAENFTEQLLPDRILPPLEEYRKINAYVRFCEVSP 707 5689***********************777665****************888888888999999999************ PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 ++kf+h+taNqaI+ea+ege+ vH+iDf ++ G+QW++++q +as + +++p++R+T++gs +++e+++tg L fA l+v+ Sphfalx0079s0027.1.p 708 FPKFAHFTANQAIMEAFEGENSVHVIDFRLGAGAQWASFIQDIASTQacgKSTPRVRLTAIGS----NADEMHATGASLCAFALLLNVS 792 ****************************************88889899*******....99**************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264 +ef++ va++ e lel++L+++ +Ea+aVn+v++lhrll +++ +++ ++vLk+v++++Pkv++vveqea+h++++F erf+ea++yy Sphfalx0079s0027.1.p 793 LEFQA-VATSPELLELSMLNLRDHEAVAVNFVFSLHRLL--DGTFSNRLNAVLKTVRDTQPKVITVVEQEANHSGSNFHERFSEAFQYY 878 *.7999*************************..67777778************************************ PP GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352 s lfdsl ++l + s+ +++E+ ll++ei n+vacega+r+erhe+le+Wr l ++GF++ pls+ + qa+ l++ + +g++v Sphfalx0079s0027.1.p 879 SFLFDSLTSSLEPGSDSSVNIENYLLAPEILNIVACEGASRVERHEQLEQWRIHLCKSGFQSRPLSDASQFQADKLVNDLStRRGFQVA 967 *****************************************************************************9*** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 ++g+l+l+W++rpL+++S+W+ Sphfalx0079s0027.1.p 968 RDNGCLLLCWQGRPLLAASSWT 989 *******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	7	1	22	No hit	No description
PROSITE profile	PS50985	56.559	592	968	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-116	619	989	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence Send to blast
MARDLKRAYN SSSGGGGMGG SCAAASVIPS MCYDLLARNG EMGSSAGNVV AVVKGGVVDD 60 NTNGGHGHGH LLSPFSSNLK VVESRPSAAT GNTARLCSAV YESGSFASIH NLRVAQQQQA 120 QQTAAHQANH HRNGGGLTES SVLISNGSSG GSGGSETVDK GNNNNAAAPR CADDWWVESW 180 ATTTIAPPPQ AAALEHNLVT SSAAPEFGGS FKPPHNSGYG NYEDFDSMLF TLPGPDPDQN 240 VMKCLMGESQ HVQHQGLQAL QQQGGGGGEG QRIIQQQYNN TDAVMMESDS WSSSHHEQQQ 300 SAQSEISHLL GGTGDAAAFS VSPSPRSINA ISEQPTSFLT PSFSSLPRAL SLPSHMQNIT 360 INSSGEHRPN SEALVRAGIN GPSGGYPFTV PSPSTAVTAA YSDSPESSPP APGDLFRQSL 420 RSNSSGFSPL QPPRESSFVA ALQASMAMKE VPRSPIHGGQ MPSSSNQGFH LNPPPSLVQG 480 SFYTQDSRDF TTSHQSLQRS FSSLPALTSM DQPMKLQGVG TAHQDYLLQR QRSWHLGRSP 540 PRHFGSDHPR NHNKVHGESR IRTGGAPSPL SSSVPGFTLS SSPKLENFKN GERKEGLVNL 600 DTGQQQEGGV IPEGGLPMKT CLLSAAKAVE VGNTEMAQAI LARLNQHISP TRGKPFHRLA 660 HYFTQALVTR IMGAENFTEQ LLPDRILPPL EEYRKINAYV RFCEVSPFPK FAHFTANQAI 720 MEAFEGENSV HVIDFRLGAG AQWASFIQDI ASTQACGKST PRVRLTAIGS NADEMHATGA 780 SLCAFALLLN VSLEFQAVAT SPELLELSML NLRDHEAVAV NFVFSLHRLL DGTFSNRLNA 840 VLKTVRDTQP KVITVVEQEA NHSGSNFHER FSEAFQYYSF LFDSLTSSLE PGSDSSVNIE 900 NYLLAPEILN IVACEGASRV ERHEQLEQWR IHLCKSGFQS RPLSDASQFQ ADKLVNDLST 960 RRGFQVARDN GCLLLCWQGR PLLAASSWTC *

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence Send to blast

MARDLKRAYN SSSGGGGMGG SCAAASVIPS MCYDLLARNG EMGSSAGNVV AVVKGGVVDD  60
NTNGGHGHGH LLSPFSSNLK VVESRPSAAT GNTARLCSAV YESGSFASIH NLRVAQQQQA  120
QQTAAHQANH HRNGGGLTES SVLISNGSSG GSGGSETVDK GNNNNAAAPR CADDWWVESW  180
ATTTIAPPPQ AAALEHNLVT SSAAPEFGGS FKPPHNSGYG NYEDFDSMLF TLPGPDPDQN  240
VMKCLMGESQ HVQHQGLQAL QQQGGGGGEG QRIIQQQYNN TDAVMMESDS WSSSHHEQQQ  300
SAQSEISHLL GGTGDAAAFS VSPSPRSINA ISEQPTSFLT PSFSSLPRAL SLPSHMQNIT  360
INSSGEHRPN SEALVRAGIN GPSGGYPFTV PSPSTAVTAA YSDSPESSPP APGDLFRQSL  420
RSNSSGFSPL QPPRESSFVA ALQASMAMKE VPRSPIHGGQ MPSSSNQGFH LNPPPSLVQG  480
SFYTQDSRDF TTSHQSLQRS FSSLPALTSM DQPMKLQGVG TAHQDYLLQR QRSWHLGRSP  540
PRHFGSDHPR NHNKVHGESR IRTGGAPSPL SSSVPGFTLS SSPKLENFKN GERKEGLVNL  600
DTGQQQEGGV IPEGGLPMKT CLLSAAKAVE VGNTEMAQAI LARLNQHISP TRGKPFHRLA  660
HYFTQALVTR IMGAENFTEQ LLPDRILPPL EEYRKINAYV RFCEVSPFPK FAHFTANQAI  720
MEAFEGENSV HVIDFRLGAG AQWASFIQDI ASTQACGKST PRVRLTAIGS NADEMHATGA  780
SLCAFALLLN VSLEFQAVAT SPELLELSML NLRDHEAVAV NFVFSLHRLL DGTFSNRLNA  840
VLKTVRDTQP KVITVVEQEA NHSGSNFHER FSEAFQYYSF LFDSLTSSLE PGSDSSVNIE  900
NYLLAPEILN IVACEGASRV ERHEQLEQWR IHLCKSGFQS RPLSDASQFQ ADKLVNDLST  960
RRGFQVARDN GCLLLCWQGR PLLAASSWTC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-58	626	989	26	378	Protein SCARECROW
5b3h_D	2e-58	626	989	26	378	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	5e-72	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0079s0027.1.p