PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0079s0051.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 582aa    MW: 63755.6 Da    PI: 6.7747
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0079s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.2e-54491901128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelv++yL+ kv ++++ + ++i+evd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd
  Sphfalx0079s0051.1.p  49 LPPGFRFHPTDEELVSYYLATKVCNSSFAV-HAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKATGKD 136
                           79*************************999.88***************99999************************************ PP

                   NAM  90 kevlsk...............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++v+++               +++lvg+kktLvfy+grapkgekt+W+mheyrl
  Sphfalx0079s0051.1.p 137 RDVITRrrsrsnsacrppaahDQQLVGMKKTLVFYTGRAPKGEKTNWIMHEYRL 190
                           ****997766666666666555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-6046231IPR003441NAC domain
PROSITE profilePS5100557.22649231IPR003441NAC domain
PfamPF023656.5E-2850190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MAAAAAPACM GISSSAEVVW HEDDIIKELH EQTADRNQQL LAAGAPAWLP PGFRFHPTDE  60
ELVSYYLATK VCNSSFAVHA IAEVDLNKCE PWELPEKAKM GEKEWYFFSL RDRKYPTGMR  120
TNRATEAGYW KATGKDRDVI TRRRSRSNSA CRPPAAHDQQ LVGMKKTLVF YTGRAPKGEK  180
TNWIMHEYRL VHAAAAAAGA AVDSSTHDLH PPAARINQLQ DEWVVCRIFQ KHHAGAGASS  240
LGGKKSSFLY SDSRFLQEAA LSYQSLDNTA TRSVSLPSAA ICSSLDHHHH HHPHPHRHRH  300
RSPNHHDYHH QPAATTVNTR TDDGNFADCE TSCGGGAAAT VANDEDTAAS SHGNIVSADY  360
YYQQQQESKA TMESMILHQT ADHHTAGLDL STSVACKQLY HPTYYDELTQ DSISSGDKNV  420
ISIIMQQQPA DSFASHQGQL QQPAAAAYGQ YPNHSMSSKS LADLHQASFM SRGAKAEPYS  480
CYDHAANDEA AQRNNNNPMS RALSYGSWGL SMAEHPVFSS EPLQGSASPC VTQSLTCGVQ  540
AAGDHHHLLQ PAGNLFCYKI NNKLYGFSDS TLDQLAECML A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-544923520172NAC domain-containing protein 19
3swm_B2e-544923520172NAC domain-containing protein 19
3swm_C2e-544923520172NAC domain-containing protein 19
3swm_D2e-544923520172NAC domain-containing protein 19
3swp_A2e-544923520172NAC domain-containing protein 19
3swp_B2e-544923520172NAC domain-containing protein 19
3swp_C2e-544923520172NAC domain-containing protein 19
3swp_D2e-544923520172NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391010.16e-86NAC domain-containing protein 46-like
RefseqXP_024391011.16e-86NAC domain-containing protein 46-like
TrEMBLA0A2K1JR801e-84A0A2K1JR80_PHYPA; Uncharacterized protein
TrEMBLA9S3Z43e-85A9S3Z4_PHYPA; Predicted protein (Fragment)
STRINGPP1S46_208V6.12e-85(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-67NAC domain containing protein 38