PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0079s0079.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 763aa    MW: 84151.8 Da    PI: 5.2359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0079s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-13562608455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ YI++Lq
  Sphfalx0079s0079.1.p 562 NHVEAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAITYINELQ 608
                           799***********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-6059236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39558607IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-19561626IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-15561612No hitNo description
PfamPF000109.9E-11562608IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-18562625IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-18564613IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MDAQMQSLWQ TAESADHAMI EAFMGTGGFG LPNYSGQGQE DLGTGAAAGL ELSETVLLRR  60
LHSLVEETSL NWTYGIFWQL SASPTGELLL GWGDGYYKGP KESEINEMKL ADRGDREEDQ  120
QLRRKVLQEL QALVCCSEDD VSDNVTDTEW FYLVSMSYSF PQGVGIPGQA LATAQHVWLV  180
EANKASEHIS IRAHLAKMAG IQTILCVPTR NGVVELGSTD LIAENWDVVQ QVRLVFDELT  240
WGPNEVQTMS QCLLMHAEAN LQQQNASVRS LPETSGSITS FSQVNAADLG QAKEQDMNFG  300
AKLFPADKMG SPMPLAGPRP FPVNKLGSPL AFTSIEGLDY LWGQSEGFAF NDPLSVDPLE  360
KESGHTAMSY PVGRLSMQDE KQSFLTLNST QTGLTPDRKL SSLPDVVNAT VFPEQRSSLL  420
PAVERPHKKL ESSASLQQNR KLAMNGVSAP VVPRQSARVM EPAQQDKFKV LHARGDVTKN  480
IGEKKAEPAF KMQKQEQQSK TVGPPVISNV HSSSDHMEWN GMESEVEASF KENGVECSLS  540
TGPRPPRKRG RKPANNREEP LNHVEAERQR REKLNQRFYA LRSVVPNVSK MDKASLLGDA  600
ITYINELQSK LQEAEFRVKE LQCRASEICE KPADSGFPTA REQSGNSTKE GLSAKPQGSS  660
NSTSVMGTYF TKRTPDINVH ILGDEAMIRV NCLRDTCSIT NLMMSLQDLH LEVQHSNTSA  720
IEDALLHIII VRMKGAERLT EEQLSAALKR ACESYQPHVE VY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-36512373193Transcription factor MYC3
4rqw_B3e-36512373193Transcription factor MYC3
4rs9_A3e-36512373193Transcription factor MYC3
4yz6_A3e-36512373193Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370448.10.0transcription factor MYC4-like isoform X1
TrEMBLA9SFN90.0A9SFN9_PHYPA; Predicted protein
STRINGPP1S74_41V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.15e-42bHLH family protein