PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0079s0087.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 155aa    MW: 17568.1 Da    PI: 6.5054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0079s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235877322
                          ETTTTEEESSHHHHHHHHHH CS
               zf-C2H2  3 CpdCgksFsrksnLkrHirt 22
                          C+ Cg sF +   + +H+r+
  Sphfalx0079s0087.1.p 58 CSTCGPSFEDMAKYSSHLRK 77
                          ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF029922.7E-211100IPR004242Transposon, En/Spm-like
PROSITE profilePS501578.6635688IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVDELKTLWD GIWAYDGRKT TGGIPRVFKL RAICMWTMHD YPGFGFVSGL QTQGYKACST  60
CGPSFEDMAK YSSHLRKIVY LGHTKFLPLG HDMRSDPLLF SSFDMPYGDE RDIPEATTFA  120
YWRDVANRVI DLNDSMVFEG SGLTRWGILN SLPY*