PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0079s0092.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 209aa    MW: 23453.5 Da    PI: 5.7461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0079s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-161564255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+G+r ++ +g+Wv+eIr+ps+   r+r++lg+f +aeeAa a++aa  +++g
  Sphfalx0079s0092.1.p 15 QYRGIRMRR-WGKWVSEIREPST---RTRIWLGSFRSAEEAAHAYDAALVCIKG 64
                          69****998.**********976...5*********************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-301473IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-201573IPR016177DNA-binding domain
PROSITE profilePS5103222.0361572IPR001471AP2/ERF domain
SMARTSM003804.6E-351578IPR001471AP2/ERF domain
PfamPF008478.9E-91561IPR001471AP2/ERF domain
PRINTSPR003671.4E-91627IPR001471AP2/ERF domain
CDDcd000182.04E-271874No hitNo description
PRINTSPR003671.4E-93854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSGRYQSRSS SSQRQYRGIR MRRWGKWVSE IREPSTRTRI WLGSFRSAEE AAHAYDAALV  60
CIKGRNAQLN FPNHAPIIPR GTPGRYTTRE IQAAAAASAA ASVGRPFSYS DFLSPESSDT  120
SDTEDLEDIT YTEPTSSYSH QQQPPITPCN NVTYYNSSSS SWSNAGPPFD DPFEREWVNS  180
MIYPPGPRVD SDDDDSSFVE PSLWSYRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-141172163ATERF1
3gcc_A7e-141172163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11322RQYRGIRMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359814.11e-50ethylene-responsive transcription factor ERF017-like
TrEMBLA0A2K1L4G93e-49A0A2K1L4G9_PHYPA; Uncharacterized protein
STRINGPP1S1_34V6.14e-50(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-18ERF family protein