PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0080s0077.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HSF

Protein Properties

Length: 494aa MW: 54511.5 Da PI: 4.8252

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0080s0077.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.1	3.9e-35	40	131	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++++d+++++++sws+ +nsfvv+++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+ Sphfalx0080s0077.1.p 40 FLTKTYDMVDDAATETIVSWSKGNNSFVVWNPPEFSQDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQ 119 9**************************************************************999.........******** PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 +ell+ i+r+k Sphfalx0080s0077.1.p 120 RELLRGIHRRKP 131 *******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.2E-39	33	123	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.2E-61	36	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.67E-34	36	129	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.3E-31	40	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.6E-19	40	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.6E-19	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	79	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.6E-19	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MVLAQVVMMN SEIPLLPAGG APPAGPQPMD GLQSNAPPPF LTKTYDMVDD AATETIVSWS 60 KGNNSFVVWN PPEFSQDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQR 120 ELLRGIHRRK PAAHSQQQQQ AAADGALGPC VEVGRLGLEK EIEMLKRDKS LLMLELVRLR 180 QEQQNTEHEL QVMGERLQAT EQRQQQIMAF LAKAVQTPGF LAHLVEQNEN NKCMAASARK 240 KRRLPKEEDE GEVEDSVGHS TPTDNQIITL QNNREVIGHI MQLLNPSDDL SLTIDNSYLD 300 SLLQDYTSAP AGSEGNSLNR HSGVTLTDLS TGLAENLQSD PALTDLRNNE GIVQLPQSPT 360 SDIARLAGGE NLEQGNGSSQ SGNRDSRDSN IESIDLNGRG PGVSTEVEEV SSSINSSAVV 420 PGANDVFWEQ YLTEEPENPA ANQDSVAHHP RETKNRAWEY TRASIGSFRD AAKVPQARNF 480 WDKKPSVSLV SPR*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MVLAQVVMMN SEIPLLPAGG APPAGPQPMD GLQSNAPPPF LTKTYDMVDD AATETIVSWS  60
KGNNSFVVWN PPEFSQDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQR  120
ELLRGIHRRK PAAHSQQQQQ AAADGALGPC VEVGRLGLEK EIEMLKRDKS LLMLELVRLR  180
QEQQNTEHEL QVMGERLQAT EQRQQQIMAF LAKAVQTPGF LAHLVEQNEN NKCMAASARK  240
KRRLPKEEDE GEVEDSVGHS TPTDNQIITL QNNREVIGHI MQLLNPSDDL SLTIDNSYLD  300
SLLQDYTSAP AGSEGNSLNR HSGVTLTDLS TGLAENLQSD PALTDLRNNE GIVQLPQSPT  360
SDIARLAGGE NLEQGNGSSQ SGNRDSRDSN IESIDLNGRG PGVSTEVEEV SSSINSSAVV  420
PGANDVFWEQ YLTEEPENPA ANQDSVAHHP RETKNRAWEY TRASIGSFRD AAKVPQARNF  480
WDKKPSVSLV SPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	2e-24	38	129	8	110	Heat shock factor protein 1
5hdn_A	2e-24	38	129	8	110	Heat shock factor protein 1
5hdn_B	2e-24	38	129	8	110	Heat shock factor protein 1
5hdn_C	2e-24	38	129	8	110	Heat shock factor protein 1
5hdn_D	2e-24	38	129	8	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024382543.1	1e-150	heat stress transcription factor A-1b-like
Swissprot	Q84T61	1e-108	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2K1LAL8	1e-148	A0A2K1LAL8_PHYPA; Uncharacterized protein
STRING	PP1S249_84V6.1	1e-149	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	5e-96	heat shock factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0080s0077.1.p

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]