PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0081s0108.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 838aa MW: 88334.3 Da PI: 5.6396

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0081s0108.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.8	3.9e-08	643	689	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sL Sphfalx0081s0108.1.p 643 SHSLAERVRREKISERMKYLQELVPGC----SKVTGKALMLDEIINYVQSL 689 8***********************9....5569************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.00E-9	637	694	No hit	No description
SuperFamily	SSF47459	5.89E-16	637	708	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-15	639	707	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.535	639	689	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-5	643	689	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-8	645	695	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MAYMAAAAAA AVREPAASYY VHGPGQLRRS ISIPASTYSW VILQESRAAA TSAGTGHDDD 60 YSSLAACSSS FVDDSDKVGA ASEIISSVFD CSASRPSSAS LQQQQLAGSM TSSSCSASEL 120 LLPGSTTRIR GDWNQLLGAG DSSCCNRVRN PTNFSSTVLS SAQVLNSVVD GIEGFGAQGQ 180 YCSTSRLGGA IDSLTVAAGG GGAGHSSRSR WSEELEQQPC GGISVEPATK GGLVTLQQLA 240 GVVEGVATCS FDSHCYCLDQ FSSDPAFAER AAKFSSFSNN NNVDDGGTTL YSQMINSHHP 300 LAALPFRQTT FDCIIGKLGD QRVAAGTSSA QLRTQPLLHS GRKISRTSSC PPAAAAAAAT 360 SAAGKLINLA AAAVVAPKLG TAANDATHEE EPRSGHTQNM EVEELVAAST AVDQPELVKE 420 PAALEASPQG FMRSKEVGID GVTRSEAAAA DFSCCTPAAT AAAEVGRSSA RESSDDRTRE 480 NKRKFVDIHS NAKETNLINS KLVDRQSDQD PRHDPRAKRY KGGSGATKLA AASADQEEDD 540 QQRQLMKSLK AGADQARISS SRETSSGDDD SSSCPMISST TTAAAAAAGK LTTMQQKENE 600 KPSCILMQTS EPPCTTSSAA AAASNKKVDY VHVRARRGQA TDSHSLAERV RREKISERMK 660 YLQELVPGCS KVTGKALMLD EIINYVQSLR RQVEFLSMKL ASVNSQLDFN LDSILNKEML 720 WSQDSAVLLP APSLSYGLHL PPLIQQHLAT DGPDFQSLAT IDTLLCRRTM SAPISVPCAP 780 NADAFGDDPS TQMSTEWDGE LQTMFQMGFG QVSRATPLME GSFNTCHLPA GHMKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MAYMAAAAAA AVREPAASYY VHGPGQLRRS ISIPASTYSW VILQESRAAA TSAGTGHDDD  60
YSSLAACSSS FVDDSDKVGA ASEIISSVFD CSASRPSSAS LQQQQLAGSM TSSSCSASEL  120
LLPGSTTRIR GDWNQLLGAG DSSCCNRVRN PTNFSSTVLS SAQVLNSVVD GIEGFGAQGQ  180
YCSTSRLGGA IDSLTVAAGG GGAGHSSRSR WSEELEQQPC GGISVEPATK GGLVTLQQLA  240
GVVEGVATCS FDSHCYCLDQ FSSDPAFAER AAKFSSFSNN NNVDDGGTTL YSQMINSHHP  300
LAALPFRQTT FDCIIGKLGD QRVAAGTSSA QLRTQPLLHS GRKISRTSSC PPAAAAAAAT  360
SAAGKLINLA AAAVVAPKLG TAANDATHEE EPRSGHTQNM EVEELVAAST AVDQPELVKE  420
PAALEASPQG FMRSKEVGID GVTRSEAAAA DFSCCTPAAT AAAEVGRSSA RESSDDRTRE  480
NKRKFVDIHS NAKETNLINS KLVDRQSDQD PRHDPRAKRY KGGSGATKLA AASADQEEDD  540
QQRQLMKSLK AGADQARISS SRETSSGDDD SSSCPMISST TTAAAAAAGK LTTMQQKENE  600
KPSCILMQTS EPPCTTSSAA AAASNKKVDY VHVRARRGQA TDSHSLAERV RREKISERMK  660
YLQELVPGCS KVTGKALMLD EIINYVQSLR RQVEFLSMKL ASVNSQLDFN LDSILNKEML  720
WSQDSAVLLP APSLSYGLHL PPLIQQHLAT DGPDFQSLAT IDTLLCRRTM SAPISVPCAP  780
NADAFGDDPS TQMSTEWDGE LQTMFQMGFG QVSRATPLME GSFNTCHLPA GHMKVEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0081s0108.1.p