PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0082s0020.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 1046aa    MW: 113010 Da    PI: 5.7372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0082s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-1660106148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT+eEde l +av++l g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Sphfalx0082s0020.1.p  60 KGGWTPEEDEVLRRAVQLLKGKNWKKIAEFFT-DRTDVQCLHRWQKVL 106
                           688****************************9.************986 PP
2Myb_DNA-binding54.23.2e-17112158148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT+ Ed+l+ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Sphfalx0082s0020.1.p 112 KGAWTKVEDDLIMELVAKHGPTKWSMIAQSLP-GRIGKQCRERWHNHL 158
                           79******************************.*************97 PP
3Myb_DNA-binding56.37.3e-18164208147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +W+++Ed+ l++a++++G++ W+ Ia+ ++ gRt++++k++w++ 
  Sphfalx0082s0020.1.p 164 REAWSEQEDLTLINAHQLYGNK-WAEIAKFLP-GRTDNSIKNHWHST 208
                           789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.20555106IPR017930Myb domain
SuperFamilySSF466892.44E-1557112IPR009057Homeodomain-like
SMARTSM007171.5E-1459108IPR001005SANT/Myb domain
PfamPF002499.7E-1560106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2062118IPR009057Homeodomain-like
CDDcd001675.93E-1363106No hitNo description
PROSITE profilePS5129430.569107162IPR017930Myb domain
SuperFamilySSF466898.99E-31109205IPR009057Homeodomain-like
SMARTSM007172.4E-15111160IPR001005SANT/Myb domain
PfamPF002492.7E-16112158IPR001005SANT/Myb domain
CDDcd001678.77E-14114158No hitNo description
Gene3DG3DSA:1.10.10.607.1E-26119165IPR009057Homeodomain-like
PROSITE profilePS5129423.135163213IPR017930Myb domain
SMARTSM007172.7E-17163211IPR001005SANT/Myb domain
PfamPF002492.1E-16164207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-23166212IPR009057Homeodomain-like
CDDcd001677.69E-13166206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MASTQGNNNN NSCTTTSTEH MQQQRSSACS SGLESDDDTS RDHLPPVHGR TGGPTRRSSK  60
GGWTPEEDEV LRRAVQLLKG KNWKKIAEFF TDRTDVQCLH RWQKVLNPDL VKGAWTKVED  120
DLIMELVAKH GPTKWSMIAQ SLPGRIGKQC RERWHNHLNP NIKREAWSEQ EDLTLINAHQ  180
LYGNKWAEIA KFLPGRTDNS IKNHWHSTMK KRVDPETATD PVSKALAAYQ AQQDAITSAG  240
SSMHLEPAMN MTGRVGPSTS KFKTFCQPFE CFRGMSTNPY MTFYDGDGDL PMSKAAVTAA  300
AAAPLQQSSL HAWLESGALS TTMDLPRHPS FSLVSPMSPS SKGFPSMAIP SPLSTSASFL  360
TSSMPVAPLD SMDSITPLHG RPAATSGQSV ATMDTQQPET KSMMEGVTKL LDTNPTSAAE  420
CDDTQGDNPT GNEVVGYQDE VLRAANQAVG DYHPGATYML MEVELEEEDR DMEGSMGIEM  480
EGLFYEPPRF PCSSESPFVS YDLIQSGQAL QAYSPLGIRQ MIVSMGNCIT PPPYHLSSES  540
PFQGNSPQSR LRSAAQSFSG SPSILRKRPR HLVIPPKQGN NNTGGKKDRR LGPSWMSPRV  600
KEEKTTTADL LNCSVKTPDS TVQCSSLREE SVKPDCQART ALFVSPPYHL GKSSSSEVVP  660
GDLLNSEYRT QDCTKDRSGG VGCYSSLPTS ARDGREVAAA CSTGISEAAG GKCTKQQSHG  720
LTHEYHTGSI QWADSEQATK EGSLPVEQRT NGKGKPFFPL EANTLSTHVL VGTEKDDSGM  780
VLGGNPGFGE MRASCETSML RSESLIAAAA VSSKAPDQTE MMSQGGSMPP LGVWASLRYA  840
SSPGSAVLQE APGIDWLAEL ESINFASVMS DGSFSSPTAI WREHWRVDPF PSAEKDGAIS  900
SVEGSDAPAR GREDDALGIM EHLNEDNAAA YCEAEEVLAS LPSAVCMASP HSQYRTRTNV  960
GHSPHDCKEN MRNISVDGGT SSSFVNWLPP FHVDFLSPDR GITRTPVRGG STLGLNGGLD  1020
ETHAVGGGGS CDQFSPSIYL LKECR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-66602136159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-66602136159MYB PROTO-ONCOGENE PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S120_159V6.11e-122(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-87myb domain protein 3r-4