PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0082s0076.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 408aa MW: 47103.3 Da PI: 7.2321

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0082s0076.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00083	40	59	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0082s0076.1.p 40 CSTCGPSFEDMAKYSSHLRK 59 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	1.6E-16	8	81	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	38	70	IPR007087	Zinc finger, C2H2
Pfam	PF13960	1.6E-15	216	276	IPR025452	Domain of unknown function DUF4218

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MTTRGIPRVF KLRAICMWTM HDYPGFGFVS GLQTQGYKAC STCGPSFEDM AKYSSHLRKI 60 VYLGHTKFLP LGHDMRSDPL LFSSFDMPYG DDRDIPEATT FAYWRDVANR VIDLNDSMVF 120 EGSGLTRWGI LNSLPYWGYG ANLQKAFGRD DDHKWPRYLK THDYHRLLQH ILPVAIIGLA 180 SAEVQDAIWS LGNLLRWVCS KELFVEEIPR MKVIAAEVIA IAGPVHCRWM YWLERYMAVL 240 KGYVCNHARV EGSMAAGHLA TESMFYCTNI LATIDPSCPH VWMEEREEEE DRLTGAIKTR 300 MLLPIELIQL TTFMLNNSNV MEEWRNFYEN AKNMSGRSRI FPTFHKYMKE KLVEVDQLLA 360 QGESIACFPE ITDDVRTMVH GPLRVVTTRS AMWTQGRHFR YSFFLFH*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MTTRGIPRVF KLRAICMWTM HDYPGFGFVS GLQTQGYKAC STCGPSFEDM AKYSSHLRKI  60
VYLGHTKFLP LGHDMRSDPL LFSSFDMPYG DDRDIPEATT FAYWRDVANR VIDLNDSMVF  120
EGSGLTRWGI LNSLPYWGYG ANLQKAFGRD DDHKWPRYLK THDYHRLLQH ILPVAIIGLA  180
SAEVQDAIWS LGNLLRWVCS KELFVEEIPR MKVIAAEVIA IAGPVHCRWM YWLERYMAVL  240
KGYVCNHARV EGSMAAGHLA TESMFYCTNI LATIDPSCPH VWMEEREEEE DRLTGAIKTR  300
MLLPIELIQL TTFMLNNSNV MEEWRNFYEN AKNMSGRSRI FPTFHKYMKE KLVEVDQLLA  360
QGESIACFPE ITDDVRTMVH GPLRVVTTRS AMWTQGRHFR YSFFLFH*

Link Out ? help Back to Top
Phytozome	Sphfalx0082s0076.1.p