PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0083s0040.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 507aa    MW: 55765.6 Da    PI: 5.8812
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0083s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEde+lv  ++ +G g+W+++++  g+ R++k+c++rw +yl
  Sphfalx0083s0040.1.p 14 KGPWTAEEDEKLVSFINTHGLGCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                          79******************************99************97 PP
2Myb_DNA-binding44.63.3e-1469110346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            + + E++l++++++ lG++ W++Ia+ ++ gRt++++k++w++
  Sphfalx0083s0040.1.p  69 IFAEAEEQLILELHASLGNR-WSRIAAQLP-GRTDNEIKNYWNT 110
                           56688***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-22563IPR009057Homeodomain-like
PROSITE profilePS5129416.257961IPR017930Myb domain
SuperFamilySSF466899.36E-2911108IPR009057Homeodomain-like
SMARTSM007179.3E-151363IPR001005SANT/Myb domain
PfamPF002498.7E-161461IPR001005SANT/Myb domain
CDDcd001671.20E-111661No hitNo description
PROSITE profilePS5129425.01662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2564116IPR009057Homeodomain-like
SMARTSM007176.2E-1466114IPR001005SANT/Myb domain
PfamPF002496.0E-1370110IPR001005SANT/Myb domain
CDDcd001672.48E-1072112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGRKPCCDKV GLKKGPWTAE EDEKLVSFIN THGLGCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGIF AEAEEQLILE LHASLGNRWS RIAAQLPGRT DNEIKNYWNT RLKKKLRHMG  120
LDPSTHKPLN SQLADSPETS EVDCEQSEDE HMLTTSVDLP HAASKRNLQQ ELKVLCNNPA  180
IESTVCVGQF SQSIAEQKEN SRVGNRSVSQ KLTQSKLLPC ALVAQGGLTE TKPNVPQVFE  240
SMRRRVSDRG HAKLEHYKSL LQKVPKEPVV QARKVDANKG ELAAGHEQKQ PLSPTSVIHR  300
VKLDEDSEDS VLTARDDCQT QSGCSMPAKL SLPEGSAEGF PSLAWDGQRC DPVKSEMIAT  360
DVCNDTDSGV IDIPVLKSEQ ICAARSGELD GSTGVLFHDD NGPSSCQEFA KIYSQDTWGD  420
FEALPLHPGD VVGGAFTGLL SEVEYAPHQW NGAGIQWSME GGGHEHSSYE ASALTPWQRA  480
SDCFYNSTPT PYTQELQQLA AILDEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RLKKKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.18e-73myb domain protein 20