PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0085s0030.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 536aa    MW: 58871.6 Da    PI: 5.0984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0085s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++lv  ++ +G g+W+++++  g+ R++k+c++rw +yl
  Sphfalx0085s0030.1.p 14 KGPWTAEEDQKLVSFINAHGLGCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                          79******************************99************97 PP
2Myb_DNA-binding44.24.3e-1472110646
                           HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             E++l++d+++ lG++ W++Ia+ ++ gRt++++k++w++
  Sphfalx0085s0030.1.p  72 DAEEQLILDLHASLGNR-WSRIAAQLP-GRTDNEIKNYWNT 110
                           67***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-22563IPR009057Homeodomain-like
PROSITE profilePS5129416.221961IPR017930Myb domain
SuperFamilySSF466897.49E-2811108IPR009057Homeodomain-like
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
PfamPF002491.9E-151461IPR001005SANT/Myb domain
CDDcd001672.51E-111661No hitNo description
PROSITE profilePS5129424.27562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2464116IPR009057Homeodomain-like
SMARTSM007173.2E-1366114IPR001005SANT/Myb domain
PfamPF002492.6E-1272110IPR001005SANT/Myb domain
CDDcd001675.45E-1074112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MGRKPCCDKV GLKKGPWTAE EDQKLVSFIN AHGLGCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGIF ADAEEQLILD LHASLGNRWS RIAAQLPGRT DNEIKNYWNT RLKKKLRHMG  120
LDPSTHKPFQ DSQLGQADDS PEASEFEVVD CDQISEDDHH MLTVAVDSFP PEAAADEGLL  180
QQDLELKACN DSAVKGTPRA HFSQSNFAED KANPRDESHS VPEKLLLLPH ALHVAQAGGL  240
STESKSNVPQ VFESMNRRGV CDRGRSPQLE DYKLLLQKVP RQSVMQLDTA IVDASIKEEL  300
AAVHDEEQQP LSPTSVIHRG KSDEDSEDSN PTTSRDDPQL NQTRTGLCCM PAAKVPGKSS  360
EERVTTAPDG QKFNPVMSAK LGTHLCDGMD SHIMDIVSVV KSEDTFAAIS GEFDPTSGAP  420
FNEPSSCQQF GKISKQDIWG DFTSFPLHSG DVGSSGLTSQ MAGVEYVPHQ WSGMASQWAA  480
EGGGHDHTSY EAASTLTPWQ RASSDSYITD YFYNSIPTPY PSQELQRLAA ILDEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RLKKKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.16e-74myb domain protein 20