PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0085s0040.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 436aa    MW: 47045.3 Da    PI: 8.614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0085s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19277328155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +g+++AeIrd      ++ +r++lg+f+t+eeAa a+++a++k++g
  Sphfalx0085s0040.1.p 277 PHFRGVRRRP-WGKFAAEIRD----AaRQgARVWLGTFDTPEEAALAYDRAALKMRG 328
                           689*******.**********....44235*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-15277328IPR001471AP2/ERF domain
CDDcd000184.38E-31277336No hitNo description
Gene3DG3DSA:3.30.730.101.7E-30278337IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22278337IPR016177DNA-binding domain
PROSITE profilePS5103223.525278336IPR001471AP2/ERF domain
SMARTSM003802.0E-36278342IPR001471AP2/ERF domain
PRINTSPR003675.9E-10279290IPR001471AP2/ERF domain
PRINTSPR003675.9E-10302318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MMNLGILPSL QDNQMINVGF EGWDENTKQS STTTKKPPVK RCAWMIGTQL RKRLGDKFAE  60
SFASIVAQVV ANSSTAMKNS ELVTKVQEEP AEAAHVSDSS LRNSLQSEEL ETASSVQGLH  120
ATWRSTVCDH DRLSDSSEAE AAQTKRVCCG TPPPDFLSQF SHDSTSSTGA AAFPLDENDP  180
EDMCIFGILS NLGSDTAAGS EAFLPSFSVP GPAATPQTIP RLLGPVLTKE KVPQCSEHAE  240
KLQQRVSLVT ASGATARIAA ERSLQVKLPQ QPGSKQPHFR GVRRRPWGKF AAEIRDAARQ  300
GARVWLGTFD TPEEAALAYD RAALKMRGSR ALLNFPLLAT SALSNPASMN IPAATLLKMV  360
RNPISPTVHQ LGAGAAAPVI GPVSAIDLSS SDLNTSTDDH WFKKRPREAK VPEMQQKFHI  420
TTSRIKHARI MQAFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29274342169ATERF1
3gcc_A2e-29274342169ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-33ethylene responsive element binding factor 1