PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0085s0075.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 973aa    MW: 107976 Da    PI: 5.8631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0085s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05418439223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C+ C++ Fs+++ L+ H++ H
  Sphfalx0085s0075.1.p 418 ICKVCDRIFSNSEALEIHQSAH 439
                           7******************988 PP
2zf-C2H213.10.00028501522223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C++C++++s+++ L+ H + H
  Sphfalx0085s0075.1.p 501 ICKICDTVYSNSEALRIHENGH 522
                           7*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF128740.033417436No hitNo description
PROSITE profilePS501579.951417444IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-5417439No hitNo description
SMARTSM003550.033417439IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280419439IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-5495522No hitNo description
PfamPF128740.0039500522No hitNo description
SMARTSM003550.43500522IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280502522IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.101.3E-10901969IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579037.61E-11908969IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500169.552919970IPR019787Zinc finger, PHD-finger
SMARTSM002493.4E-5921968IPR001965Zinc finger, PHD-type
PROSITE patternPS013590922967IPR019786Zinc finger, PHD-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MEVGEEEEEE EEEEEEWINS IPLIDLRSFA DDELWKLAVC SSSRPLQDIE QQHIPVPKIN  60
RAVFNESAGS KRQTYRKWDL LIQETNPTPA PTQQLLAAAQ STTGVSSSSA RKMMMMSTTI  120
LQSSSHQQET IRDNGHQCKI DQKHQGLEET GGRDSLQGVL QVETTLLESK AVAAAGRGDS  180
GTVMHLNRQE GGGVAIAGQK RRQPNDADHH HHCGDGASAH SLHQLHKSLK STQKQSPREE  240
EQHHQERVAA HGSAELSMAA GMMMSSMGEH PPPPPPPPPS AAASLGQQNN PDVESEPEFY  300
AEMMKQQLKK KNGTWMTTAN MDGKVMHAQG FPKGWTVSVG LRHKTGQLFY EYKQWKSPDG  360
KIWGSFKEAA VHMVHMLQRE HFFNVIAPPR RSCPVCEQLD PSLIHLTHCC PMRDPEWICK  420
VCDRIFSNSE ALEIHQSAHA STSQVLKDPL KASTGSRNPF EADIASTPET NPVVCGNGGS  480
YSSSHISCHT CTTATDPSRW ICKICDTVYS NSEALRIHEN GHALASQMLN TKRLVTDSRL  540
QNTNCKGHHG KILSVRQGQQ ESESKREGDK IHRNLTSRED GLTKRDLLEG MMDASQNHQR  600
QLLQQSPIGS REEYLCISCD AEQQKANPRS KDFGSSQHLS SFSHTDMPCS NNLHTHSEVA  660
PSNSLDPIYE ENPASADVSN SSDASNYSEE LPPKGFRGFQ MGLDENGTHV GGGYPKVQKT  720
AEDEHGGAFE SPTCHEHFYK ASLLNDHLAS LKPRRKKPTQ VLYNSEIIGS METLRTNFDQ  780
SITGVDMKNH LEAKLENESA SVQGQPMQEI FWRMIQNSAH VGTPNGTHTS NATVTAFLEK  840
EKAEDMQHGM KTEIFGEDEV RYAELHQKIN TNIACTEAQA IHTVLNMQSQ YSSDEGGAEQ  900
EEHHKDNEFQ SPAQSPYEEG DCYICGTHEK GAPEQVYCDC CGAGFHWSCV TSELQPVPEG  960
SWMCPECEIE HF*