PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0086s0033.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HSF
Protein Properties Length: 518aa    MW: 57250.1 Da    PI: 4.5794
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0086s0033.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35581492102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++++ ++swse +nsfvv+++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Sphfalx0086s0033.2.p  58 FLTKTYDMVDDAATDMIVSWSEGNNSFVVWNPPEFSQDLLPKYFKHNNFSSFVRQLNTYGFHKVDPDR---------WEFANEGFLRGR 137
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           +ell+ i+r+k 
  Sphfalx0086s0033.2.p 138 RELLRGIHRRKP 149
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-3951141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6154147IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-3454147IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3058147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-195881IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-19109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MRSDTRSLRV QDLGESIVPP PPPPPPSLVT NSETSLVPGG AAVPQPMDGL QSNAPPPFLT  60
KTYDMVDDAA TDMIVSWSEG NNSFVVWNPP EFSQDLLPKY FKHNNFSSFV RQLNTYGFHK  120
VDPDRWEFAN EGFLRGRREL LRGIHRRKPA AHSQQQQQAT DGSLGPSMDE EKLELERQVE  180
MLKRDKSVLM LELMRLRQVQ QNTEHELQVM AERLQATQQR QQQIMAFLAK AAQTPGFLAH  240
LVAQNENNRR MAASASKRRR LSKEEDEGEV EDCFDCTTPA DGQIVTIQNN GEVVSQIMQL  300
LNPPDGSSPT IDNSHLDSLL RDYTSTLAAS EGNTLNRQSG VTVTDLSTGL TEHLQSDPVV  360
TDTRNNEGIV QLPPSPRSDN ARVAGGENVE QWSGSCQSGT RDSRDGNMGC LDLNVGGHGG  420
STEVEEVSSS IDCTTKVRGA NDVFWEQYLT EEPETPTDRD SDANHQQETE NRAWEDYSGA  480
PVGSSRDDSR SPQAQKLWDC KPSVDLLSHK MGQLAPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-225614718120Heat shock factor protein 1
5d5u_B1e-22341475129Heat shock factor protein 1
5d5v_B1e-22341475129Heat shock factor protein 1
5d5v_D1e-22341475129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256260KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.11e-142heat stress transcription factor A-1b-like
TrEMBLA0A2K1LAL81e-140A0A2K1LAL8_PHYPA; Uncharacterized protein
STRINGPP1S249_84V6.11e-141(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-73heat shock transcription factor A1D