PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0088s0070.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MIKC_MADS
Protein Properties Length: 352aa    MW: 39210.7 Da    PI: 5.4395
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0088s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.6e-27959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien +nrqvt+skRr g++KKA+ELSvLCd++v +i+fs++gkl  y++
  Sphfalx0088s0070.1.p  9 KKIENPTNRQVTYSKRRSGLIKKAYELSVLCDIDVGLIMFSPSGKLTQYCN 59
                          68***********************************************85 PP
2K-box18.48.7e-081101721069
                 K-box  10 eeakaeslqqelakLkkeienLqreqRhllGed..LesL.slkeLqqLeqqLekslkkiRskK 69 
                           e+ +   lq+e++kL +e e+Lq++ R +l ++  ++s  s+++L  +e++Le++l+++R++K
  Sphfalx0088s0070.1.p 110 ENYEVGVLQEEVKKLTDEKEMLQQQARLILADEelIQSVtSVQHLVDMERELEQALERVRQRK 172
                           45556679*****************99988754335665389********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.763161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.95E-37273No hitNo description
SuperFamilySSF554551.29E-30282IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-5113172IPR002487Transcription factor, K-box
PROSITE profilePS512976.84114223IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRSGLIK KAYELSVLCD IDVGLIMFSP SGKLTQYCNC  60
SIEDVIARFA NLPLHERNKR LYLHKSLKKL AAGEKDLAAL DQQFASGSSE NYEVGVLQEE  120
VKKLTDEKEM LQQQARLILA DEELIQSVTS VQHLVDMERE LEQALERVRQ RKLMGMQHGG  180
ALAGTVQGPT SFLQWNMPER NQPATLQEYI EHQSLMLAQM SSRGVGGNSG ASTSSFFPVG  240
SQTELYQRLG QQDLTIHELG MDQTARPGQY DDRDLEAKLE AGGNSMTFAA SSSSAEEEAD  300
ESTFGSPTDQ KQHADNASTS SWQPQHHQQA YSGSHEYPAT YFSQQNSDGW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A5e-17269168Myocyte-specific enhancer factor 2A
3mu6_B5e-17269168Myocyte-specific enhancer factor 2A
3mu6_C5e-17269168Myocyte-specific enhancer factor 2A
3mu6_D5e-17269168Myocyte-specific enhancer factor 2A
6bz1_A7e-17189190MEF2 CHIMERA
6bz1_B7e-17189190MEF2 CHIMERA
6bz1_C7e-17189190MEF2 CHIMERA
6bz1_D7e-17189190MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344550.0GQ334455.1 Sphagnum subsecundum MIKC* MADS-box transcription factor (MADS1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371368.11e-111MADS-box transcription factor 3-like
TrEMBLD3IZT70.0D3IZT7_9BRYO; MIKC* MADS-box transcription factor
STRINGPP1S163_73V6.11e-107(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-37AGAMOUS-like 66