PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0090s0111.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 383aa    MW: 42853.2 Da    PI: 9.3483
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0090s0111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-08168226255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +kGV  ++k++ W+A+I+       ++ +   + +lg + t++eA + ++  ++kl++
  Sphfalx0090s0111.1.p 168 IFKGVGLHSKSKLWEAHIWLGDLdpvRKnQGqGQLYLGAYETEDEAVRVHDLVALKLRK 226
                           69*****************9333466555336**********99*************97 PP
2AP221.75e-07271334154
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpse......ng....krkrfslgkfgtaeeAakaaiaarkkle 54 
                           s++kGV+ +++ ++W+A+I   ++      +g    k+   +lg + t+eeAa+  +  ++ ++
  Sphfalx0090s0111.1.p 271 SRFKGVSKHSSGKKWEARIGYTTTassaaaGGsriiKKEDRYLGLHPTEEEAARCVDMVALHFH 334
                           789***************99966677665433988555999************98887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-6167235IPR016177DNA-binding domain
SMARTSM003800.0015168242IPR001471AP2/ERF domain
PROSITE profilePS5103212.655168235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-6169236IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-7271344IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-7272344IPR001471AP2/ERF domain
PROSITE profilePS5103212.668272344IPR001471AP2/ERF domain
SMARTSM003808.6E-13272350IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MADTFVEMNH EYDNDLVNVL EAIAAASDEA ASIRGTICED RADQRQQQPV EPSAAPRPAE  60
SHDQLMRPGS LVGVQTERLP HRAERDAHKK SKRRIDGSMN RPIDLKEQAT RSTGASEIAA  120
GPPASKKPKR MVKGTMSCEL TAAAAETTRP KKRKYPNVPS TQERATSIFK GVGLHSKSKL  180
WEAHIWLGDL DPVRKNQGQG QLYLGAYETE DEAVRVHDLV ALKLRKNDKY ELNFNDPGAY  240
ASEFPRLEAL DTRDYIWSFR RNAVCFSRGT SRFKGVSKHS SGKKWEARIG YTTTASSAAA  300
GGSRIIKKED RYLGLHPTEE EAARCVDMVA LHFHGWDDAI TNFAPSQYTK EMVQQHLERL  360
EKKDYKIPPD LLASWPKFHR AG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-26AINTEGUMENTA-like 5