PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0091s0015.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 414aa    MW: 46395.4 Da    PI: 8.3622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0091s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.6e-10116155549
                   AP2   5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaa 49 
                           GVr ++ +g++ AeIr+      ++kr++lg+f tae Aa a++ a
  Sphfalx0091s0015.1.p 116 GVR-CR-NGSFTAEIRVtK----RNKRIWLGSFKTAEAAALAHDVA 155
                           898.55.7*********33....24**********99999999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.484111173IPR001471AP2/ERF domain
SMARTSM003801.2E-8116179IPR001471AP2/ERF domain
CDDcd000186.28E-14116175No hitNo description
PfamPF008473.1E-4116155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-14116158IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-9116163IPR016177DNA-binding domain
PROSITE profilePS5029320.848201336IPR013026Tetratricopeptide repeat-containing domain
PROSITE profilePS500055.546201234IPR019734Tetratricopeptide repeat
Gene3DG3DSA:1.25.40.102.1E-27224398IPR011990Tetratricopeptide-like helical domain
SMARTSM0002836235268IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.608235268IPR019734Tetratricopeptide repeat
SuperFamilySSF484522.91E-32239347IPR011990Tetratricopeptide-like helical domain
SMARTSM0002829269302IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.962269302IPR019734Tetratricopeptide repeat
SMARTSM000280.057303336IPR019734Tetratricopeptide repeat
PROSITE profilePS500058.26303336IPR019734Tetratricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MVDGGEASWK GSGCLQTKLK EKLKQAKDKR VGRGPDRCVH SRQVPCRQFA ASSSGSQATG  60
NPEIVSDVLP ITSVKQVVQF DLDYGLRQPF CVTDLDFLEE FSDIIAGDLR VERRIGVRCR  120
NGSFTAEIRV TKRNKRIWLG SFKTAEAAAL AHDVATFLRV TYFGAKDPTY NFDSSPSSFP  180
PFDEISHLNS DEEKFELIRK LAKNHPYAKM AKNSKDYELA IEAFNRALTE HQKQDTLKKL  240
NGSELFKSAQ YPQAVKHYSE AIKRNSTDAK AYSNREACYS KQGPFPERLK DADKCIEFDP  300
SFAKGYSPKG TIQFFMKEYD KALETYQTGL KYNDGNQGLM DGTSRCIEQI NKVTRGDISA  360
EDLEEKTGLL QLGETQVLTD LQENPKAAQE HVKNAMVMER IQKLVSAGIV QVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lni_A2e-2724234723128Stress-induced-phosphoprotein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMediates the association of the molecular chaperones HSP70 and HSP90. Mediates nuclear encoded chloroplast preproteins binding to HSP90 prior to chloroplastic sorting (By similarity). Involved in acclimation to heat. {ECO:0000250, ECO:0000269|PubMed:17085506}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9STH14e-83HSOP3_ARATH; Hsp70-Hsp90 organizing protein 3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-09ERF family protein
Publications ? help Back to Top
  1. Ermolaeva MD,Wu M,Eisen JA,Salzberg SL
    The age of the Arabidopsis thaliana genome duplication.
    Plant Mol. Biol., 2003. 51(6): p. 859-66
    [PMID:12777046]
  2. Prasad BD,Goel S,Krishna P
    In silico identification of carboxylate clamp type tetratricopeptide repeat proteins in Arabidopsis and rice as putative co-chaperones of Hsp90/Hsp70.
    PLoS ONE, 2010. 5(9): p. e12761
    [PMID:20856808]
  3. Fellerer C,Schweiger R,Schöngruber K,Soll J,Schwenkert S
    Cytosolic HSP90 cochaperones HOP and FKBP interact with freshly synthesized chloroplast preproteins of Arabidopsis.
    Mol Plant, 2011. 4(6): p. 1133-45
    [PMID:21596689]
  4. Fernández-Bautista N,Fernández-Calvino L,Muñoz A,Castellano MM
    HOP3, a member of the HOP family in Arabidopsis, interacts with BiP and plays a major role in the ER stress response.
    Plant Cell Environ., 2017. 40(8): p. 1341-1355
    [PMID:28155228]
  5. Fernández-Bautista N,Fernández-Calvino L,Muñoz A,Castellano MM
    HOP3 a new regulator of the ER stress response in Arabidopsis with possible implications in plant development and response to biotic and abiotic stresses.
    Plant Signal Behav, 2017. 12(5): p. e1317421
    [PMID:28426278]