PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0091s0092.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 724aa    MW: 77993 Da    PI: 8.0043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0091s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-06120142123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C++C+k F r  nL+ H r+H
  Sphfalx0091s0092.1.p 120 YVCEICSKGFQRDQNLQMHKRRH 142
                           9*********************9 PP
2zf-C2H215.93.6e-05209231123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k +  +s++k H++t+
  Sphfalx0091s0092.1.p 209 WQCTKCSKEYAVQSDYKAHQKTC 231
                           58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-5119142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.9E-6119142No hitNo description
PROSITE profilePS5015711.406120142IPR007087Zinc finger, C2H2
SMARTSM003550.0043120142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SMARTSM00355170173203IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4200230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.9E-6204230No hitNo description
SMARTSM0035547209236IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MMQQDIAAYS SSRDCSTSSS AACMIKLLSD HESDGTGAPA DDDHIADRSV FFEQLPAGAA  60
APALAGSPPN DLVSTPASPP PTSANGTINK KRKRRLAGTP DADAEVIALT PKKLLESDRY  120
VCEICSKGFQ RDQNLQMHKR RHKVPWTLLK RGSTTAAPAN STNEVQQQRK RVYVCPEESC  180
LHHNACHALG DLVGIRKHYR RKHSTEKQWQ CTKCSKEYAV QSDYKAHQKT CGTRGHSCDC  240
GRVFSRVEGF IEHHDKCVAL LGKEKAAAVV ANSSDMSRTP ESCTDHHGQM SADIQQQQLM  300
SGWNLMTPAL EYAEAPRDFQ GSVQEKYAAA AWSAAAPSRQ CLAGIEEFNP ARSTTAPCSI  360
AATSWAESRR GAGGLFQEMQ AGPFLRAANS HWSPMWFDPA RFHDLQPGSV NSTTTNQNYG  420
TRAAAAPSDH QPAAAGPCAT ITDQLFPTDH DASLRLSIGP SHPLVEVLTP AKLSREEQKR  480
DLILIETKPK LDMSAYLQRI RSRSCVDPDV ENYRLLPPAA GREVVLDVSA AAAAAAAGSN  540
ESRAATAAGR RADHDYELNI SARRAAQIST ADGYYSSRIQ LLQKQSDYNS PHAELQVLQA  600
AGSCCNYSSR PPAAAGITAF RSLAGAAGEY AAAAADQYGS THETAVLGSS TRECWIPNPT  660
YNCNTSTSTS LISRSSTTSN MILGSREVSR VPDQHNSTIG AGASGPTKTA RSLMLQQYWI  720
SPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-18206260458Zinc finger protein JACKDAW
5b3h_F3e-18206260458Zinc finger protein JACKDAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.16e-87indeterminate(ID)-domain 14