PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0094s0015.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 259aa    MW: 29597.9 Da    PI: 8.5818
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0094s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.9e-1628115184
              trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                           rWtk+e+l+L++a+++  e+  +g       +   +W  v +++++ g+ r + qC+++w +l k+ykkik++e+ r  ++ s + +  
  Sphfalx0094s0015.1.p  28 RWTKHETLTLVAAKKKEIEKTLDGTargidtASDVKWVTVFQYCKQFGVDRDASQCRKRWHSLYKDYKKIKDHENLR--GVGSYWTMSA 114
                           8************996555555432233333999*****************************************96..6666676655 PP

              trihelix  84 q 84 
                           +
  Sphfalx0094s0015.1.p 115 E 115
                           5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0862891IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-42892IPR009057Homeodomain-like
PfamPF138371.3E-1128112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MCVIITMTGE GGDSQKVEAI DKGPRGLRWT KHETLTLVAA KKKEIEKTLD GTARGIDTAS  60
DVKWVTVFQY CKQFGVDRDA SQCRKRWHSL YKDYKKIKDH ENLRGVGSYW TMSAELRREH  120
KLAASFERDI FEALEMYCRR MPAIAPKAAF DNVPSSYKKS VDLIPEVQEG PMQEDLLMDN  180
GDADDEAGVY PMGKKKKKRQ REPMEEQLIS VLERSSQDLQ RHLSLDRELR KEQSRGLVEV  240
LNKLVDVIGT MAEAMQKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200KKKRQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373724.13e-78trihelix transcription factor ASR3-like
RefseqXP_024374422.13e-78trihelix transcription factor ASR3-like
TrEMBLA0A2K1KPL37e-77A0A2K1KPL3_PHYPA; Uncharacterized protein
STRINGPP1S60_28V6.11e-77(Physcomitrella patens)
STRINGPP1S60_31V6.21e-77(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-32Trihelix family protein