PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0096s0050.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

M-type_MADS

Protein Properties

Length: 335aa MW: 36993.4 Da PI: 6.1259

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0096s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.6	2.2e-20	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + e++ nr tf+kR ng+lKKA ELS+LCd++va+i fs+tg+l y+ Sphfalx0096s0050.1.p 10 KLEEENNRRSTFAKRGNGVLKKACELSILCDTDVAIIAFSPTGELLYYC 58 568999***************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.619	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.7E-23	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-21	2	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-17	11	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGKVKIETKK LEEENNRRST FAKRGNGVLK KACELSILCD TDVAIIAFSP TGELLYYCNT 60 SSHIQRKILL DSLCGLFINS VADVIKRFAD VDPKRRTEMP ENDEVKDHHP NYANHDQEEQ 120 VNLLHVLQTD SSSNLCNNGP ENDETIQVLD VKSLPLNATI DEDMFNPPAP KRARASGGVR 180 FVSQQNIQQE PHQFHPQGTI GVVGMAPSTC ATAVRFLPQI DVQQVAPLQA LPPIDTASGI 240 TPGENFQDGI YMRNKGTTSQ SHHARFRRIV QAAYDKACYL NQIEHAHQGA DYKKAIREDQ 300 GFGASLWSAF PGCSNGNNFT QGTFECDDGQ NPLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-21	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Sphfalx0096s0050.1.p