PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0096s0055.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family M-type_MADS
Protein Properties Length: 81aa    MW: 8953.4 Da    PI: 8.6513
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0096s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.42.9e-211258450
                          -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          +++ nr  tf+kR ng+lKKA ELS+LCd++va+i fs+tg+l  y+
  Sphfalx0096s0055.1.p 12 QEENNRRSTFAKRGNGVLKKACELSILCDTDVAIIAFSPTGELLYYC 58
                          67899**************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.679161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23173IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-18323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-181255IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MGKVKLQTKK LQEENNRRST FAKRGNGVLK KACELSILCD TDVAIIAFSP TGELLYYCNT  60
SVADVIKRFA DVDPKCHTEM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15173173MEF2C
5f28_B3e-15173173MEF2C
5f28_C3e-15173173MEF2C
5f28_D3e-15173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372215.19e-23transcription factor CAULIFLOWER-like
SwissprotQ1PFA41e-21AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLD3IZU08e-22D3IZU0_9BRYO; MIKC* MADS-box transcription factor
STRINGPP1S55_280V6.14e-22(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-24AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]