PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0096s0076.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HD-ZIP

Protein Properties

Length: 228aa MW: 25093 Da PI: 7.9934

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0096s0076.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	89	141	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +ftk q++ Le F+ + p+ ++++LA++lg++ rqV +WFqNrRa+ k Sphfalx0096s0076.1.p 89 KLRFTKPQVRLLEHTFQTLQRPNCYQKADLARELGVQPRQVDIWFQNRRARGK 141 568************************************************88 PP
2	HD-ZIP_I/II	92.8	3.8e-30	88	168	2	82
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +k+r++k qv+lLE++F++ ++ + +K++lareLg+qprqv++WFqnrRAR k+k +++d+++L+++++ l +en++L+ Sphfalx0096s0076.1.p 88 QKLRFTKPQVRLLEHTFQTLQRPNCYQKADLARELGVQPRQVDIWFQNRRARGKAKATDSDCDVLRQRCQDLIAENHHLNL 168 79***************************************************************************9974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.601	83	143	IPR001356	Homeobox domain
SMART	SM00389	1.6E-14	85	147	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.31E-16	87	141	IPR009057	Homeodomain-like
Pfam	PF00046	8.1E-16	89	141	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.9E-18	90	146	IPR009057	Homeodomain-like
CDD	cd00086	7.63E-15	91	139	No hit	No description
PRINTS	PR00031	4.9E-6	114	123	IPR000047	Helix-turn-helix motif
PRINTS	PR00031	4.9E-6	123	139	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MADRYNNIFA TINSLGLNVA RQSAVDGAAA GCLCGVESPQ YSASELIQLR AGGGGGGSDF 60 YNSRRPLNCN DRGSDGSLDN DDEEGSSQKL RFTKPQVRLL EHTFQTLQRP NCYQKADLAR 120 ELGVQPRQVD IWFQNRRARG KAKATDSDCD VLRQRCQDLI AENHHLNLLI QNERMSHESM 180 LYNYGRSPAS THDQAASTTV ESRSGPAVQI QMLLCNSCKK LKTFPPA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396326.1	2e-53	homeobox-leucine zipper protein HOX17-like
Refseq	XP_024396327.1	2e-53	homeobox-leucine zipper protein HOX17-like
TrEMBL	A0A2K1JE05	5e-52	A0A2K1JE05_PHYPA; Uncharacterized protein
TrEMBL	A9U306	2e-52	A9U306_PHYPA; Predicted protein (Fragment)
STRING	PP1S454_12V6.1	9e-53	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	3e-24	homeobox protein 2

Link Out ? help Back to Top
Phytozome	Sphfalx0096s0076.1.p