PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0097s0067.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 322aa    MW: 35526.8 Da    PI: 4.3412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0097s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS59.66.5e-198116384164
                  GRAS  84 fsevsPil.kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetger 164
                            +e sP++  f++++aN +I e++++e+ vHiiDf+i qG    aL+qaLa+ p+gpp+l+iT v++p+sg      +  +e +g+r
  Sphfalx0097s0067.1.p  81 AVESSPLYsYFGYMAANGTIAEEFQNEKLVHIIDFEIAQG----ALIQALAALPGGPPHLQITRVDDPASGlggmsPTGGVELVGQR 163
                           3689996526******************************....7**********************99887777666667777666 PP
2GRAS131.11.2e-40165321193361
                  GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                           +L+ +pgEa  Vn++lqlh+++desv+ +s+   + ++vk+l  kvv++veqea++n+++F+ rf+eal+yysa+f+sl+ +l+ es++
  Sphfalx0097s0067.1.p 165 MLEQQPGEAFTVNFALQLHHMPDESVCANSPWYWMFQMVKGLHLKVVTLVEQEANTNTAPFFPRFMEALSYYSAIFESLDITLSCESQD 253
                           89999************************************************************************************ PP

                  GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                            ++vE+++l++++ n           rhe l+kW++++++aGF+p+pls++++ ++k+ll+ +++  yr++ee g+l+lg
  Sphfalx0097s0067.1.p 254 HVNVEQQCLAPNLAN-----------RHELLGKWKAWMTMAGFQPYPLSSSVNHTIKTLLESYSD-KYRLKEEGGALILG 321
                           *******98887765...........9*************************************5.5**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.0981315IPR005202Transcription factor GRAS
PfamPF035142.2E-1681163IPR005202Transcription factor GRAS
PfamPF035144.2E-38165321IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTQQPTTQGR ANYVAEQWQA QAHRVHASSE MSGEVAHVLH FLERDLLDDE ADETDVAASL  60
SQECNTGSDG NWADTLEELF AVESSPLYSY FGYMAANGTI AEEFQNEKLV HIIDFEIAQG  120
ALIQALAALP GGPPHLQITR VDDPASGLGG MSPTGGVELV GQRVMLEQQP GEAFTVNFAL  180
QLHHMPDESV CANSPWYWMF QMVKGLHLKV VTLVEQEANT NTAPFFPRFM EALSYYSAIF  240
ESLDITLSCE SQDHVNVEQQ CLAPNLANRH ELLGKWKAWM TMAGFQPYPL SSSVNHTIKT  300
LLESYSDKYR LKEEGGALIL G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-278831089348GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368210.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368212.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368213.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368214.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368215.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368216.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368217.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368218.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368219.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368220.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368221.11e-108scarecrow-like transcription factor PAT1
RefseqXP_024368222.11e-108scarecrow-like transcription factor PAT1
SwissprotQ69VG16e-82CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
SwissprotQ9LDL74e-82PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA9U3241e-110A9U324_PHYPA; PAL1B encoding AtPAT1-like protein
STRINGPP1S456_3V6.21e-107(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.25e-70GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]