PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0097s0090.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family RAV
Protein Properties Length: 1212aa    MW: 130249 Da    PI: 6.2954
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0097s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42e-14330378155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV    ++grW A+I++      ++r++lg+f+t+eeAa+a+++a+ k++g
  Sphfalx0097s0090.1.p 330 SQFRGVV-PQSNGRWGAQIYEK-----HQRIWLGTFDTEEEAARAYDRAAIKFRG 378
                           6899996.6779*********3.....5************************998 PP
2B399.32.4e-31526626199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+ tpsdv+k++rlv+pk++ae++        +++ ++tl++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+
  Sphfalx0097s0090.1.p 526 FDKAVTPSDVGKLNRLVIPKQHAERCfpldlsA-NSP-GQTLSFEDVSGKHWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVSFE 612
                           89***************************9853.433.459************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             +  ++el++ ++rk
  Sphfalx0097s0090.1.p 613 --RGPNQELHIDFRRK 626
                           ..4499999***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-18330386IPR016177DNA-binding domain
PROSITE profilePS5103220.587331386IPR001471AP2/ERF domain
SMARTSM003802.5E-31331392IPR001471AP2/ERF domain
CDDcd000181.79E-26331388No hitNo description
Gene3DG3DSA:3.30.730.101.5E-21331386IPR001471AP2/ERF domain
PRINTSPR003677.3E-5332343IPR001471AP2/ERF domain
PfamPF008471.2E-8332378IPR001471AP2/ERF domain
PRINTSPR003677.3E-5352368IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-41520627IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-30524626IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-27524625No hitNo description
PfamPF023622.0E-27526626IPR003340B3 DNA binding domain
PROSITE profilePS5086315.566526627IPR003340B3 DNA binding domain
SMARTSM010195.1E-27526627IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1212 aa     Download sequence    Send to blast
MTAATAFIQL ALMLPKDEKT VQMWSKAAVA RWSPRMLSSE QYQQEQQRHA AAAGGPDVTL  60
RLSNLEAVTA AASSGSDSDV SSSKNVKSFS SGGRGGAEDG GGSGGGDGGC VKVGTYWMMP  120
GKPLQPTMNP TEVSSMEKKT ALLGITEKIA VALAAGNCAA AQGFNRAAAS TPKLETEDSC  180
SGGGGHDHES GCRMATRTRA LQSCSSGPAA ETCSFLPTST CVAAAARQKH TEELEQQSNA  240
AGSGQTRLQN SGGAEYGSIN DAGDYLRSSW PTGVLDLVRR GTLEERTPSG GGQSLSGSGG  300
GEDVENGGEE EEDDRGGSRE PSSSSKLPSS QFRGVVPQSN GRWGAQIYEK HQRIWLGTFD  360
TEEEAARAYD RAAIKFRGRD AMTNFRPVQD NDFEAQFLLK YTKEQVVEML RHHTYDEELD  420
QSRKHSSSCL QQEAGSMAVV VSGHDDDPHH RGGVLAVHRS SSPPPVGISL APAVAAAAAS  480
LSLSLNESMV DTTVSPAAAP SLSSGLSAVS NAVVTAAAAT VREHLFDKAV TPSDVGKLNR  540
LVIPKQHAER CFPLDLSANS PGQTLSFEDV SGKHWRFRYS YWNSSQSYVL TKGWSRFVKE  600
KRLDAGDIVS FERGPNQELH IDFRRKQVAA AAGGTPSSSA SDRLPYRGAW LPQCSYNPIM  660
SKSAGGHAPF NSSIWQPFNF ASPQIPSLSS SLQPSLDRML YGNNAYNQMF QPSSSLRLSS  720
SLNPFHTNLD MSSHSLSTAV KAQPRVAAAV AASSSASPPW PLASTTGADY VGAIELRLGW  780
QESGRAEDLD RTQDRAFTNN NSTTNVFQCE VPAIINSSGT RLFGVDLEQH TAIASSSQVK  840
LLQSPTLSKI GQSLLPSGSA TLEMAEISAP SHVMHSSPSH LKIEPFDRLG KSASTAVQSA  900
GLQFSDLSHS HFRHEELFTG FETLLSKQQS QQQPSEQVNM RSCINLQATS GNSAAQEGSL  960
PLAENLALEV WKANENAHES LIHEDVRAAV NCEQSSSLNP WTIENHRKRK KILGDSELES  1020
LKGKIGLGGT CGETGETDTS LTLAHADSHH LENDSRQQCR SYGEGSLGKT LEILPAGGEQ  1080
MPKRHCSPVC TPLKMQGFVH GAESSTHNGN HNIVVDGEGP NSNYTQIHLE NSLPTEREMQ  1140
SIKCSLDWQM SEPISVPLLR FQSTEELRSH LLELTKGREI FYKDKAGEIV LLQNQNWEFF  1200
INSAQEMIIQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-505226264113B3 domain-containing transcription factor NGA1
5os9_B8e-505226264113B3 domain-containing transcription factor NGA1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110061010RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-49B3 family protein