PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0099s0066.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family M-type_MADS
Protein Properties Length: 478aa    MW: 51718.3 Da    PI: 4.6743
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0099s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.64.3e-20957149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k+ien s rqv fskRr g++KKA+ELS+LC+ +v +i+fs+ gk + +
  Sphfalx0099s0066.1.p  9 KKIENPSARQVCFSKRRVGLIKKASELSILCGSDVGIIVFSQAGKAFSF 57
                          68******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-24169IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.506161IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-33160IPR002100Transcription factor, MADS-box
CDDcd002651.27E-33268No hitNo description
PRINTSPR004042.3E-20323IPR002100Transcription factor, MADS-box
PfamPF003199.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGRAKIEIKK IENPSARQVC FSKRRVGLIK KASELSILCG SDVGIIVFSQ AGKAFSFGHP  60
CVDYVIDKTL ISDAVTTDDQ QKQTKDDNNA GNIHNNNKNA VVSAPVNCDM AQQKLQQVQA  120
LEQQQKQVLQ LLAAEKELNH RLLLHPFWWQ RSIVGMRVPE LQYMLQRIDA LYELLVTRAC  180
LLQQQVTNST DPCISSQELD CVADAAGPGG PHAAVAAATS LLPDEQPTTR FDQGGGSTQI  240
LPDLTTTSSA SLQQQHSFLS GTRSKVETSS EFAALNEQLD SLASLATQPS CGCSTDDDAH  300
AQVQQAFDHL DAASSCDQLV ANISAAAHFP SSPVLYNDQE QPQFLNLVES AGGPDQWSTS  360
TSTTRHIYEL QQQNQVAAAL HQQQQQQQQA ISAFLKDDCN EVPDTVIGGG SSCSSDDDDD  420
NNNNNSSRGA LQKTTEIIIP SSSSPNPDFL NKISFNKQFC AAREAENPGS HAQPIWA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22AGAMOUS-like 61