PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0100s0011.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 310aa    MW: 34129.1 Da    PI: 5.9182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0100s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11102143854
                           HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            Er+RR+++N+++  Lr+++P+ +      K++K++iL  A+ Y+++L
  Sphfalx0100s0011.1.p 102 SERNRRKKLNKSLYSLRSVVPHiS------KMDKSSILSDAITYLQDL 143
                           6*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.56494143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1697163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14101158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.51E-12101148No hitNo description
PfamPF000105.6E-9102143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.03E-5230294No hitNo description
PROSITE profilePS5167110.172233309IPR002912ACT domain
CDDcd021169.26E-4234280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQWPCCNHQH PTTAAGIITS CQCQSSLHGS PDIIGATQLA ENLEPQDDTQ YPGSHLVMER  60
TQNTGQEDVW EYTMDQLEEH EEVEGGYEQM SAGTFMSRNL VSERNRRKKL NKSLYSLRSV  120
VPHISKMDKS SILSDAITYL QDLKKQLKIL EDEIRKEEAA ISFLGVHKRS SSIVNSGQSE  180
NKKVNAGATG ECQGTATKDG SYHRHKNQEH VDVSLQCSQS NHIAVSELDG MYTVRISCQR  240
KPGSLLQLSR ALDALGLNII FSNISAMNGS EQATCTFIAE MTGREVGSSE SLAAEILEAT  300
ARFYSGHIC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197106RNLVSERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-24bHLH family protein